Shared GitHub organization for work related to OME-Zarr and scalable bioimage analysis workflows.
This org was created at the 2023 Next generation bioimage analysis workflows hackathon held at the BioVisionCenter at UZH, for the purposes of continuing collaboration and innovation on NGFF-based and FAIR image processing workflows. Continued at the 2024 OME-NGFF workflows hackathon
- Bioimage tools which consume and/or produce OME-Zarr
- OCI containers
- Nextflow modules and subworkflows
- Galaxy integrations
- Fractal integrations
- OME-Zarr usage examples
- OME-Zarr performance evaluation
- OME-Zarr 0.5 tool evaluation
- ...