{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,28]],"date-time":"2026-02-28T07:31:36Z","timestamp":1772263896582,"version":"3.50.1"},"publisher-location":"New York, NY, USA","reference-count":32,"publisher":"ACM","license":[{"start":{"date-parts":[[2022,7,10]],"date-time":"2022-07-10T00:00:00Z","timestamp":1657411200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"NSF","award":["1826967, 1911095, 2052809, 2112665, 2112167, 2100237"],"award-info":[{"award-number":["1826967, 1911095, 2052809, 2112665, 2112167, 2100237"]}]},{"name":"SRC Global Research Collaboration (GRC)"}],"content-domain":{"domain":["dl.acm.org"],"crossmark-restriction":true},"short-container-title":[],"published-print":{"date-parts":[[2022,7,10]]},"DOI":"10.1145\/3489517.3530449","type":"proceedings-article","created":{"date-parts":[[2022,8,23]],"date-time":"2022-08-23T23:19:29Z","timestamp":1661296769000},"page":"313-318","update-policy":"https:\/\/linproxy.fan.workers.dev:443\/https\/doi.org\/10.1145\/crossmark-policy","source":"Crossref","is-referenced-by-count":10,"title":["A near-storage framework for boosted data preprocessing of mass spectrum clustering"],"prefix":"10.1145","author":[{"given":"Weihong","family":"Xu","sequence":"first","affiliation":[{"name":"University of California"}]},{"given":"Jaeyoung","family":"Kang","sequence":"additional","affiliation":[{"name":"University of California"}]},{"given":"Tajana","family":"Rosing","sequence":"additional","affiliation":[{"name":"University of California"}]}],"member":"320","published-online":{"date-parts":[[2022,8,23]]},"reference":[{"key":"e_1_3_2_1_1_1","unstructured":"2017. Intel SSD DC P4500 Series. https:\/\/linproxy.fan.workers.dev:443\/https\/ark.intel.com\/content\/www\/us\/en\/ark\/products\/series\/96935\/intel-ssd-dc-p4500-series.html."},{"key":"e_1_3_2_1_2_1","unstructured":"2021. Open NAND Flash Interface Specification. https:\/\/linproxy.fan.workers.dev:443\/http\/www.onfi.org\/specifications."},{"key":"e_1_3_2_1_3_1","unstructured":"2022. NVM Express Base Specification 2.0. https:\/\/linproxy.fan.workers.dev:443\/https\/nvmexpress.org\/developers\/nvme-specification\/."},{"key":"e_1_3_2_1_4_1","volume-title":"USENIX ATC","volume":"57","author":"Nitin","unstructured":"Nitin Agrawal et al. 2008. Design tradeoffs for SSD performance.. In USENIX ATC, Vol. 57."},{"key":"e_1_3_2_1_5_1","first-page":"126","article-title":"CPU Energy Meter: A tool for energy-aware algorithms engineering","volume":"12079","author":"Beyer Dirk","year":"2020","unstructured":"Dirk Beyer and Philipp Wendler. 2020. CPU Energy Meter: A tool for energy-aware algorithms engineering. Tools and Algorithms for the Construction and Analysis of Systems 12079 (2020), 126.","journal-title":"Tools and Algorithms for the Construction and Analysis of Systems"},{"key":"e_1_3_2_1_6_1","doi-asserted-by":"crossref","unstructured":"Wout Bittremieux et al. 2021. Large-scale tandem mass spectrum clustering using fast nearest neighbor searching. bioRxiv (2021).","DOI":"10.1002\/RCM.9153\/v3\/response1"},{"key":"e_1_3_2_1_7_1","doi-asserted-by":"crossref","unstructured":"Fran\u00e7ois-Michel Boisvert et al. 2012. A quantitative spatial proteomics analysis of proteome turnover in human cells. Molecular & Cellular Proteomics 11 3 (2012).","DOI":"10.1074\/mcp.M111.011429"},{"key":"e_1_3_2_1_8_1","doi-asserted-by":"publisher","DOI":"10.1145\/2818376"},{"key":"e_1_3_2_1_9_1","doi-asserted-by":"crossref","unstructured":"Wooseong Cheong et al. 2018. A flash memory controller for 15&mu;s ultra-low-latency ssd using high-speed 3d nand flash with 3&mu;s read time. In ISSCC. 338--340.","DOI":"10.1109\/ISSCC.2018.8310322"},{"key":"e_1_3_2_1_10_1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.3267"},{"key":"e_1_3_2_1_11_1","doi-asserted-by":"publisher","DOI":"10.1021\/pr070361e"},{"key":"e_1_3_2_1_12_1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jproteome.5b00654"},{"key":"e_1_3_2_1_13_1","doi-asserted-by":"publisher","DOI":"10.1038\/nmeth.3902"},{"key":"e_1_3_2_1_14_1","volume-title":"RAPID: A ReRAM processing in-memory architecture for DNA sequence alignment. In ISLPED. 1--6.","author":"Saransh Gupta","year":"2019","unstructured":"Saransh Gupta et al. 2019. RAPID: A ReRAM processing in-memory architecture for DNA sequence alignment. In ISLPED. 1--6."},{"key":"e_1_3_2_1_15_1","volume-title":"Medal: Scalable dimm based near data processing accelerator for dna seeding algorithm. In MICRO. 587--599.","author":"Wenqin Huangfu","year":"2019","unstructured":"Wenqin Huangfu et al. 2019. Medal: Scalable dimm based near data processing accelerator for dna seeding algorithm. In MICRO. 587--599."},{"key":"e_1_3_2_1_16_1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jproteome.9b00328"},{"key":"e_1_3_2_1_17_1","doi-asserted-by":"publisher","DOI":"10.1145\/2700310"},{"key":"e_1_3_2_1_18_1","doi-asserted-by":"publisher","DOI":"10.1038\/nature13302"},{"key":"e_1_3_2_1_19_1","doi-asserted-by":"publisher","DOI":"10.1145\/3352460.3358320"},{"key":"e_1_3_2_1_20_1","doi-asserted-by":"publisher","DOI":"10.1002\/pmic.200401303"},{"key":"e_1_3_2_1_21_1","doi-asserted-by":"crossref","unstructured":"Naveen Muralimanohar et al. 2007. Optimizing NUCA organizations and wiring alternatives for large caches with CACTI 6.0. In MICRO. 3--14.","DOI":"10.1109\/MICRO.2007.33"},{"key":"e_1_3_2_1_22_1","doi-asserted-by":"publisher","DOI":"10.1002\/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2"},{"key":"e_1_3_2_1_23_1","doi-asserted-by":"publisher","DOI":"10.1007\/s12035-015-9456-z"},{"key":"e_1_3_2_1_24_1","volume-title":"INSIDER: Designing in-storage computing system for emerging high-performance drive. In 2019 USENIX ATC. 379--394.","author":"Ruan Zhenyuan","year":"2019","unstructured":"Zhenyuan Ruan, Tong He, and Jason Cong. 2019. INSIDER: Designing in-storage computing system for emerging high-performance drive. In 2019 USENIX ATC. 379--394."},{"key":"e_1_3_2_1_25_1","volume-title":"International Conference on Management of Data. 1557--1570","author":"Anil","unstructured":"Anil Shanbhag et al. 2018. Efficient top-k query processing on massively parallel hardware. In International Conference on Management of Data. 1557--1570."},{"key":"e_1_3_2_1_26_1","doi-asserted-by":"publisher","DOI":"10.1021\/acs.jproteome.5b00749"},{"key":"e_1_3_2_1_27_1","unstructured":"UCSD. 2022. MassIVE: Mass Spectrometry Interactive Virtual Environment. https:\/\/linproxy.fan.workers.dev:443\/https\/massive.ucsd.edu\/."},{"key":"e_1_3_2_1_28_1","doi-asserted-by":"publisher","DOI":"10.1038\/nbt.2839"},{"key":"e_1_3_2_1_29_1","first-page":"147","article-title":"msCRUSH: fast tandem mass spectral clustering using locality sensitive hashing","volume":"18","author":"Lei Wang","year":"2018","unstructured":"Lei Wang et al. 2018. msCRUSH: fast tandem mass spectral clustering using locality sensitive hashing. Journal of proteome research 18, 1 (2018), 147--158.","journal-title":"Journal of proteome research"},{"key":"e_1_3_2_1_30_1","unstructured":"Wikipedia. 2022. Mass Spectrometry. https:\/\/linproxy.fan.workers.dev:443\/https\/en.wikipedia.org\/wiki\/Mass_spectrometry."},{"key":"e_1_3_2_1_31_1","doi-asserted-by":"crossref","unstructured":"Ryuji Yamashita et al. 2017. A 512Gb 3b\/cell flash memory on 64-word-line-layer BiCS technology. In ISSCC. 196--197.","DOI":"10.1109\/ISSCC.2017.7870328"},{"key":"e_1_3_2_1_32_1","doi-asserted-by":"crossref","unstructured":"\u015eule Yilmaz et al. 2017. Methods to calculate spectrum similarity. In Proteome bioinformatics. 75--100.","DOI":"10.1007\/978-1-4939-6740-7_7"}],"event":{"name":"DAC '22: 59th ACM\/IEEE Design Automation Conference","location":"San Francisco California","acronym":"DAC '22","sponsor":["SIGDA ACM Special Interest Group on Design Automation","IEEE CEDA"]},"container-title":["Proceedings of the 59th ACM\/IEEE Design Automation Conference"],"original-title":[],"link":[{"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/dl.acm.org\/doi\/10.1145\/3489517.3530449","content-type":"unspecified","content-version":"vor","intended-application":"text-mining"},{"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/dl.acm.org\/doi\/pdf\/10.1145\/3489517.3530449","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/dl.acm.org\/doi\/pdf\/10.1145\/3489517.3530449","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2025,6,17]],"date-time":"2025-06-17T20:18:39Z","timestamp":1750191519000},"score":1,"resource":{"primary":{"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/dl.acm.org\/doi\/10.1145\/3489517.3530449"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2022,7,10]]},"references-count":32,"alternative-id":["10.1145\/3489517.3530449","10.1145\/3489517"],"URL":"https:\/\/linproxy.fan.workers.dev:443\/https\/doi.org\/10.1145\/3489517.3530449","relation":{},"subject":[],"published":{"date-parts":[[2022,7,10]]},"assertion":[{"value":"2022-08-23","order":2,"name":"published","label":"Published","group":{"name":"publication_history","label":"Publication History"}}]}}