{"id":"https://openalex.org/W4377966839","doi":"https://doi.org/10.1109/access.2023.3279498","title":"DTL-NeddSite: A Deep-Transfer Learning Architecture for Prediction of Lysine Neddylation Sites","display_name":"DTL-NeddSite: A Deep-Transfer Learning Architecture for Prediction of Lysine Neddylation Sites","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4377966839","doi":"https://doi.org/10.1109/access.2023.3279498"},"language":"en","primary_location":{"id":"doi:10.1109/access.2023.3279498","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3279498","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10134527.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10134527.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055426534","display_name":"Deli Xu","orcid":"https://orcid.org/0009-0000-4662-7528"},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I4210140630","display_name":"Sinotech Genomics (China)","ror":"https://ror.org/035caev54","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210140630"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Deli Xu","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University, Qingdao, China","College of Computer Science and Technology, Qingdao University, Qingdao, China; Sino Genomics Technology Company Ltd., Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China","institution_ids":[]},{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China; Sino Genomics Technology Company Ltd., Qingdao, China","institution_ids":["https://openalex.org/I4210140630","https://openalex.org/I108688024"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112806401","display_name":"Yafei Zhu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yafei Zhu","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100593513","display_name":"Qiang Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I108688024","display_name":"Qingdao University","ror":"https://ror.org/021cj6z65","country_code":"CN","type":"education","lineage":["https://openalex.org/I108688024"]},{"id":"https://openalex.org/I4210116869","display_name":"Affiliated Hospital of Qingdao University","ror":"https://ror.org/026e9yy16","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116869"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Xu","raw_affiliation_strings":["Department of Geriatrics, The Affiliated Hospital of Qingdao University, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"Department of Geriatrics, The Affiliated Hospital of Qingdao University, Qingdao, China","institution_ids":["https://openalex.org/I108688024","https://openalex.org/I4210116869"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017039015","display_name":"Yuhai Liu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yuhai Liu","raw_affiliation_strings":["Dawning International Information Industry Company Ltd., Qingdao, China"],"affiliations":[{"raw_affiliation_string":"Dawning International Information Industry Company Ltd., Qingdao, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106172262","display_name":"Yu Chen","orcid":"https://orcid.org/0000-0001-9926-2518"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yu Chen","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026309403","display_name":"Yang Zou","orcid":"https://orcid.org/0000-0002-8569-8780"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang Zou","raw_affiliation_strings":["Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences, Qingdao, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100440281","display_name":"Lei Li","orcid":"https://orcid.org/0000-0002-0956-1205"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Li","raw_affiliation_strings":["College of Computer Science and Technology, Qingdao University, Qingdao, China","College of Computer Science and Technology, Qingdao University, Qingdao, China; Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China","institution_ids":[]},{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, China; Faculty of Biomedical and Rehabilitation Engineering, University of Health and Rehabilitation Sciences, Qingdao, China","institution_ids":["https://openalex.org/I143413998"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5055426534"],"corresponding_institution_ids":["https://openalex.org/I108688024","https://openalex.org/I4210140630"],"apc_list":{"value":1850,"currency":"USD","value_usd":1850},"apc_paid":{"value":1850,"currency":"USD","value_usd":1850},"fwci":0.6098,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.69565446,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"11","issue":null,"first_page":"51798","last_page":"51809"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12016","display_name":"Web Data Mining and Analysis","score":0.9684000015258789,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6236345171928406},{"id":"https://openalex.org/keywords/neddylation","display_name":"Neddylation","score":0.548242449760437},{"id":"https://openalex.org/keywords/lysine","display_name":"Lysine","score":0.5416373014450073},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5381328463554382},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43448495864868164},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.16755414009094238},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.09083688259124756},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.062320560216903687}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6236345171928406},{"id":"https://openalex.org/C45005369","wikidata":"https://www.wikidata.org/wiki/Q21115705","display_name":"Neddylation","level":5,"score":0.548242449760437},{"id":"https://openalex.org/C2776016237","wikidata":"https://www.wikidata.org/wiki/Q178430","display_name":"Lysine","level":3,"score":0.5416373014450073},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5381328463554382},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43448495864868164},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.16755414009094238},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.09083688259124756},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.062320560216903687},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.0},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/access.2023.3279498","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3279498","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10134527.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f7f6accc5b794e0ca56a127f4e56431f","is_oa":true,"landing_page_url":"https://doaj.org/article/f7f6accc5b794e0ca56a127f4e56431f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Access, Vol 11, Pp 51798-51809 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1109/access.2023.3279498","is_oa":true,"landing_page_url":"https://doi.org/10.1109/access.2023.3279498","pdf_url":"https://ieeexplore.ieee.org/ielx7/6287639/10005208/10134527.pdf","source":{"id":"https://openalex.org/S2485537415","display_name":"IEEE Access","issn_l":"2169-3536","issn":["2169-3536"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Access","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3825923827","display_name":null,"funder_award_id":"32271504","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6383537973","display_name":null,"funder_award_id":"31770821","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7426206236","display_name":null,"funder_award_id":"32071430","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320308724","display_name":"Texas Space Grant Consortium","ror":"https://ror.org/05k1jx057"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4377966839.pdf","grobid_xml":"https://content.openalex.org/works/W4377966839.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1951403192","https://openalex.org/W1964213184","https://openalex.org/W2058434102","https://openalex.org/W2066745745","https://openalex.org/W2097606916","https://openalex.org/W2112739286","https://openalex.org/W2122838776","https://openalex.org/W2134095164","https://openalex.org/W2141818629","https://openalex.org/W2148715978","https://openalex.org/W2156125289","https://openalex.org/W2168182785","https://openalex.org/W2285781106","https://openalex.org/W2395579298","https://openalex.org/W2610582292","https://openalex.org/W2742750032","https://openalex.org/W2781280073","https://openalex.org/W2783455372","https://openalex.org/W2784179760","https://openalex.org/W2793168264","https://openalex.org/W2894692220","https://openalex.org/W2910654431","https://openalex.org/W2937997287","https://openalex.org/W2938240210","https://openalex.org/W2944851425","https://openalex.org/W2962785096","https://openalex.org/W2979650406","https://openalex.org/W2998176018","https://openalex.org/W3003441605","https://openalex.org/W3006054280","https://openalex.org/W3041133507","https://openalex.org/W3084410714","https://openalex.org/W3107801628","https://openalex.org/W3108989381","https://openalex.org/W3121648591","https://openalex.org/W3121966255","https://openalex.org/W3125967610","https://openalex.org/W3136291807","https://openalex.org/W3173216909","https://openalex.org/W3199126542","https://openalex.org/W4200456546","https://openalex.org/W4210323069","https://openalex.org/W4212895872","https://openalex.org/W4296007707","https://openalex.org/W4299518610","https://openalex.org/W4303856695","https://openalex.org/W4313568932","https://openalex.org/W4352978462","https://openalex.org/W6682132143","https://openalex.org/W6747464465","https://openalex.org/W6755206553"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2222975708","https://openalex.org/W2021846401","https://openalex.org/W4400474006","https://openalex.org/W3048551493","https://openalex.org/W4402027802","https://openalex.org/W2792771883","https://openalex.org/W2083008763"],"abstract_inverted_index":{"Neddylation,":[0],"as":[1],"a":[2,8,62,123,134,202],"reversible":[3],"post-translational":[4],"modification":[5,233],"(PTM),":[6],"plays":[7],"role":[9],"in":[10,15,50,187,215,230],"various":[11,66],"cellular":[12],"processes.":[13],"Defects":[14],"neddylation":[16,23,55,101,174],"are":[17],"related":[18],"to":[19,48,53,86,121,160,198,201,219,226],"human":[20],"diseases.":[21],"Detecting":[22],"sites":[24,37,118,157],"is":[25,41,46,241],"necessary":[26],"for":[27,129],"revealing":[28],"the":[29,87,140,146,151,162,167,170,180,184,194,213,223],"mechanisms":[30],"of":[31,99,114,154,169],"protein":[32],"neddylation.":[33],"As":[34],"identifying":[35],"such":[36],"through":[38],"experimental":[39],"methods":[40,52],"expensive":[42],"and":[43,68,189,209],"time-consuming,":[44],"it":[45],"essential":[47],"develop":[49],"silico":[51],"predict":[54],"sites.":[56,102,175,238],"In":[57],"this":[58],"study,":[59],"we":[60],"constructed":[61,133],"few":[63],"classifiers":[64],"integrating":[65],"algorithms":[67],"encoding":[69,148],"features.":[70],"However,":[71],"they":[72],"performed":[73],"poorly":[74],"(AUC":[75],"<inline-formula":[76,91,107],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[77,92,108,246],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">":[78,93,109],"<tex-math":[79,94,110],"notation=\"LaTeX\">$\\approx":[80],"0.767$":[81],"</tex-math></inline-formula>":[82,97,112],"),":[83],"mainly":[84],"due":[85],"limited":[88,236],"number":[89,105,153],"(":[90,106],"notation=\"LaTeX\">$\\sim":[95],"$":[96],"1000)":[98],"identified":[100],"The":[103],"large":[104],"notation=\"LaTeX\">$&gt;$":[111],"100,000)":[113],"other":[115],"lysine":[116,155],"PTM":[117,156],"inspired":[119],"us":[120],"employ":[122],"deep":[124],"transfer":[125],"learning":[126],"(DTL)":[127],"strategy":[128,186,225],"performance":[130],"improvement.":[131],"We":[132,221],"predictor,":[135],"dubbed":[136],"DTL-NeddSite,":[137],"which":[138],"adopted":[139],"DTL-based":[141],"convolution":[142],"neural":[143],"network":[144],"using":[145,173],"one-hot":[147],"approach.":[149],"Specifically,":[150],"massive":[152],"were":[158,217],"used":[159,229],"build":[161],"source":[163],"model,":[164],"followed":[165],"by":[166],"fine-tuning":[168],"target":[171],"model":[172,182,205],"DTL-NeddSite":[176,216,240],"compared":[177],"favourably":[178],"with":[179,235],"corresponding":[181],"without":[183],"DTL":[185,204,224],"cross-validation":[188],"independent":[190],"tests.":[191],"For":[192],"instance,":[193],"AUC":[195],"value":[196],"increased":[197],"0.818.":[199],"Contrary":[200],"general":[203],"that":[206],"combines":[207],"frozen":[208],"unfrozen":[210,218],"layers,":[211],"all":[212],"layers":[214],"re-train.":[220],"expect":[222],"be":[227],"widely":[228],"newly":[231],"discovered":[232],"types":[234],"known":[237],"Furthermore,":[239],"freely":[242],"accessible":[243],"at":[244],"<uri":[245],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">https://github.com/XuDeli123/DTL-NeddSite</uri>":[247],".":[248]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
