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ORCID13th ISBRA 2017: Honolulu, HI, USA
- Zhipeng Cai, Ovidiu Daescu, Min Li:
Bioinformatics Research and Applications - 13th International Symposium, ISBRA 2017, Honolulu, HI, USA, May 29 - June 2, 2017, Proceedings. Lecture Notes in Computer Science 10330, Springer 2017, ISBN 978-3-319-59574-0 - Mahsa Lotfi, Burook Misganaw, Mathukumalli Vidyasagar:
Prediction of Time to Tumor Recurrence in Ovarian Cancer: Comparison of Three Sparse Regression Methods. 1-11 - Rashika Mishra, Ovidiu Daescu, Patrick Leavey
, Dinesh Rakheja, Anita Sengupta:
Histopathological Diagnosis for Viable and Non-viable Tumor Prediction for Osteosarcoma Using Convolutional Neural Network. 12-23 - Peng Ni, Min Li, Ping Zhong, Guihua Duan, Jianxin Wang, Yaohang Li, Fang-Xiang Wu:
Relating Diseases Based on Disease Module Theory. 24-33 - Kuang-Yu Chang, Yun Cui, Siu-Ming Yiu, Wing-Kai Hon:
Reconstructing One-Articulated Networks with Distance Matrices. 34-45 - Lei Wang, Zhu-Hong You, Xing Chen, Shixiong Xia, Feng Liu, Xin Yan, Yong Zhou:
Computational Methods for the Prediction of Drug-Target Interactions from Drug Fingerprints and Protein Sequences by Stacked Auto-Encoder Deep Neural Network. 46-58 - Yiqian Zhou, Rehman Qureshi, Ahmet Sacan:
Analysis of Paired miRNA-mRNA Microarray Expression Data Using a Stepwise Multiple Linear Regression Model. 59-70 - Jin Zhao, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu:
IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads - (Extended Abstract). 71-83 - Heng Yang, Chunyu Zhao, Ahmet Sacan:
Unfolding the Protein Surface for Pattern Matching. 84-95 - Michal Aleksander Ciach, Mateusz Krzysztof Lacki, Blazej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin:
Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry. 96-107 - Wessam Elhefnawy, Min Li, Jianxin Wang, Yaohang Li:
Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm. 108-119 - Wenping Liu, Guangjian Liu:
Mapping Paratope and Epitope Residues of Antibody Pembrolizumab via Molecular Dynamics Simulation. 120-127 - Zhi-Zhong Chen, Youta Harada, Lusheng Wang:
A New 2-Approximation Algorithm for rSPR Distance. 128-139 - Joshua Loving, John P. Scaduto, Gary Benson:
An SIMD Algorithm for Wraparound Tandem Alignment. 140-149 - Meena Subramaniam, Noah Zaitlen, Jimmie Ye:
PhAT-QTL: A Phase-Aware Test for QTL Detection. 150-161 - Bruno Fosso, Graziano Pesole, Francesc Rosselló, Gabriel Valiente:
Unbiased Taxonomic Annotation of Metagenomic Samples. 162-173 - Albert Ng, Dong Si:
Genetic Algorithm Based Beta-Barrel Detection for Medium Resolution Cryo-EM Density Maps. 174-185 - Jingsong Zhang, Jianmei Guo, Xiaoqing Yu, Xiangtian Yu, Weifeng Guo, Tao Zeng, Luonan Chen:
Mining K-mers of Various Lengths in Biological Sequences. 186-195 - Bo Zhang, Yi-Chieh Wu:
Coestimation of Gene Trees and Reconciliations Under a Duplication-Loss-Coalescence Model. 196-210 - Ruofan Xia, Jun Zhou, Lingxi Zhou, Bing Feng, Jijun Tang:
A Median Solver and Phylogenetic Inference Based on DCJ Sorting. 211-222 - Zaobo He, Yingshu Li, Ji Li, Jiguo Yu, Hong Gao, Jinbao Wang:
Addressing the Threats of Inference Attacks on Traits and Genotypes from Individual Genomic Data. 223-233 - Pawel Górecki, Alexey Markin, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein:
Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees. 234-245 - Augustus N. Tropea, Janey L. Valerio, Michael J. Camerino, Josh Hix, Emmalee Pecor, Peter G. Fuerst, S. Seth Long:
Computer Assisted Segmentation Tool: A Machine Learning Based Image Segmenting Tool for TrakEM2. 246-257 - Zihao Wang, Yu Chen, Jingrong Zhang, Lun Li, Xiaohua Wan, Zhiyong Liu, Fei Sun, Fa Zhang:
Accelerating Electron Tomography Reconstruction Algorithm ICON Using the Intel Xeon Phi Coprocessor on Tianhe-2 Supercomputer. 258-269 - Michael Souza, Carlile Lavor, Rafael Alves:
Modeling the Molecular Distance Geometry Problem Using Dihedral Angles. 270-278 - Alexander Hahn, Somya D. Mohanty, Prashanti Manda:
What's Hot and What's Not? - Exploring Trends in Bioinformatics Literature Using Topic Modeling and Keyword Analysis. 279-290 - Naureen Aslam Khattak, Sheikh Arslan Sehgal, Yongsheng Bai, Youping Deng:
Structure Modeling and Molecular Docking Studies of Schizophrenia Candidate Genes, Synapsins 2 (SYN2) and Trace Amino Acid Receptor (TAAR6). 291-301 - Rogério S. Rosa, Katia S. Guimarães:
Accurate Prediction of Haplotype Inference Errors by Feature Extraction. 302-313 - Xiuchun Xiao, Bing Liu, Jing Zhang, Xueli Xiao, Yi Pan:
Detecting Change Points in fMRI Data via Bayesian Inference and Genetic Algorithm Model. 314-324 - Long Ma, Zhibo Wang, Yanqing Zhang:
Extracting Depression Symptoms from Social Networks and Web Blogs via Text Mining. 325-330 - Silu Zhang, Yixin Chen, Dawn Wilkins:
A Probabilistic Approach to Multiple-Instance Learning. 331-336 - Bolin Chen, Yuqiong Jin, Xuequn Shang:
Net2Image: A Network Representation Method for Identifying Cancer-Related Genes. 337-343 - Li Zhang, Haixin Ai, Qi Zhao, Junfeng Zhu, Wen Chen, Xuewei Wu, Liangchao Huang, Zimo Yin, Jian Zhao, Hongsheng Liu:
Computational Prediction of Influenza Neuraminidase Inhibitors Using Machine Learning Algorithms and Recursive Feature Elimination Method. 344-349 - Zaobo He, Yingshu Li, Jinbao Wang:
Differential Privacy Preserving Genomic Data Releasing via Factor Graph. 350-355 - Sangwoo Kim, Hojung Nam:
In Silico Simulation of Signal Cascades in Biomedical Networks Based on the Production Rule System. 356-361 - Wei Zhou, Guangdi Liu, Jun Luo, Tingran Zhang, Le Zhang:
Using the Precision Medicine Analytical Method to Investigate the Impact of the Aerobic Exercise on the Hypertension for the Middle-Aged Women. 362-367 - Yongxiao Yang, Xinqi Gong:
Understanding Protein-Protein Interface Formation Mechanism in a New Probability Way at Amino Acid Level. 368-372 - Kai Guo, Hongfei Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Kan Xu:
Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models. 373-378 - Jun Cui, Ning Jiang, Jun Meng, Yushi Luan:
Genome-Wide Analysis of Response Regulator Genes in Solanum lycopersicum. 379-384 - Yu Chen, Zihao Wang, Lun Li, Xiaohua Wan, Fei Sun, Fa Zhang:
A Fully Automatic Geometric Parameters Determining Method for Electron Tomography. 385-389 - Ning Yu, Zeng Yu, Feng Gu, Yi Pan:
Evaluating the Impact of Encoding Schemes on Deep Auto-Encoders for DNA Annotation. 390-395 - Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky:
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities. 396-402 - Andrew Andersen, Wooyoung Kim:
NemoLib: A Java Library for Efficient Network Motif Detection. 403-407 - Brian L. Gudenas, Liangjiang Wang:
A Genetic Algorithm for Finding Discriminative Functional Motifs in Long Non-coding RNAs. 408-413 - Wojciech Czaja, Jeremiah Emidih:
Heterogeneous Cancer Cell Line Data Fusion for Identifying Novel Response Determinants in Precision Medicine. 414-419 - Alexander Artyomenko, Pelin B. Icer, Pavel Skums, Sumathi Ramachandran, Yury Khudyakov, Alex Zelikovsky:
Agent-Based in Silico Evolution of HCV Quasispecies. 420-424 - Deeptanshu Jha, Pavel Skums, Alex Zelikovsky, Yury Khudyakov, Rahul Singh:
Modeling the Spread of HIV and HCV Infections Based on Identification and Characterization of High-Risk Communities Using Social Media. 425-430
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