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ORCIDJournal of Computational Biology, Volume 33
Volume 33, Number 1, 2026
- Mona Singh:
Preface. 1 - Leah L. Weber, Anna Hart, Idoia Ochoa, Mohammed El-Kebir:
Pharming: Joint Clonal Tree Reconstruction of Single-Nucleotide Variant and Copy Number Aberration Evolution from Single-Cell DNA Sequencing of Tumors. 2-18 - Nina Corvelo Benz, Lucas Miranda, Dexiong Chen, Janko Sattler, Karsten M. Borgwardt:
Conformal Prediction with Knowledge Graphs for Reliable Antimicrobial Resistance Detection with MALDI-TOF Mass Spectra. 19-35 - Christy Lee, Dongyuan Song, Siqi Chen, Jingyi Jessica Li:
ClusterDE : A Statistical Software Package for Removing Double-Dipping Bias in Post-Clustering Differential Expression Analysis. 36-42 - Pan Liu, Jingyi Jessica Li:
mcRigor : A Statistical Software Package for Evaluating and Optimizing Metacell Partitioning in Single-Cell Data Analysis. 43-47 - Junyan Dai, Erin K. Molloy:
StarCDP: Dynamic Programming Algorithms for Fast and Accurate Cell Lineage Tree Reconstruction from CRISPR-Based Lineage Tracing Data. 48-66 - Pramesh Shakya, Ahsan Sanaullah, Degui Zhi, Shaojie Zhang:
An Efficient Dynamic Data Structure for Haplotype Matching and Compression on Biobank-Scale Data. 67-89 - Jiahan Li, Shitong Luo, Congyue Deng, Chaoran Cheng, Jiaqi Guan, Leonidas J. Guibas, Jian Peng, Jianzhu Ma:
Learning Protein Structure Representation with Orientation-Aware Networks. 90-106 - Adam Park, David Koslicki:
Elucidating Transitions of k -mer-Based Objects Across k -mer Sizes. 107-133 - Tianshuo Zhou, Apoorv Malik, Wei Yu Tang, David H. Mathews, Liang Huang:
Theory, Algorithms, and Applications for Identification of Undesignable RNA Secondary Structures and Motifs. 134-167 - Nathaniel K. Brown, Vikram Shivakumar, Ben Langmead:
Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification. 168-183 - Zexin Xue, Michael Bailey, Abhinav Gupta, Ruijiang Li, Alejandro Corrochano-Navarro, Sizhen Li, Lorenzo Kogler-Anele, Qui Yu, Heidi Rommelaere, Wander Van Breedam, Norbert Furtmann, Joseph Batchelor, Ziv Bar-Joseph, Sven Jager:
Deep Batch Active Learning for Protein Structure Modeling. 184-200 - Acknowledgment of Reviewers 2025. 201-202
Volume 33, Number 2, 2026
- Yao-ban Chan, Céline Scornavacca, Michael A. Charleston:
A Probabilistic Algorithm for Gene-Species Reconciliation with Segmental Duplications. 203-218 - Xiao Liang, Lenwood S. Heath:
Reflections on the Presence of Human Cancer Genes in Primate Genomes. 219-235 - Vy Q. Ong, Bich N. Choi, Devin P. Lundy, Yingnan Zhang, Yin Wan, Hongyan Xu, Santu Ghosh, Hui Jiang
, Yang Shi:
MCMC-CE: A Novel and Efficient Algorithm for Estimating Small Right-Tail Probabilities of Quadratic Forms with Applications in Genomics. 236-254 - Xiang Shi, Jiayi Kang, Nan Sun, Xin Zhao, Stephen S.-T. Yau:
Multi-Perspective Natural Vector: A Novel Method for Viral Sequence Feature Extraction. 255-266 - Donghui Son, Jaejik Kim:
Bayesian Validation of Dynamic Systems for Biological Networks. 267-279
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