BibTeX records: Luke T. Slater

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@article{DBLP:journals/cbm/SlaterWSRPKFBHG23,
  author       = {Luke T. Slater and
                  John A. Williams and
                  Paul N. Schofield and
                  Sophie Russell and
                  Samantha C. Pendleton and
                  Andreas Karwath and
                  Hilary Fanning and
                  Simon Ball and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Klarigi: Characteristic explanations for semantic biomedical data},
  journal      = {Comput. Biol. Medicine},
  volume       = {153},
  pages        = {106425},
  year         = {2023},
  url          = {https://doi.org/10.1016/j.compbiomed.2022.106425},
  doi          = {10.1016/J.COMPBIOMED.2022.106425},
  timestamp    = {Sat, 13 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/SlaterWSRPKFBHG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/midm/SlaterRMCKWFBHG22,
  author       = {Luke T. Slater and
                  Sophie Russell and
                  Silver Makepeace and
                  Alexander Carberry and
                  Andreas Karwath and
                  John A. Williams and
                  Hilary Fanning and
                  Simon Ball and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Evaluating semantic similarity methods for comparison of text-derived
                  phenotype profiles},
  journal      = {{BMC} Medical Informatics Decis. Mak.},
  volume       = {22},
  number       = {1},
  pages        = {33},
  year         = {2022},
  url          = {https://doi.org/10.1186/s12911-022-01770-4},
  doi          = {10.1186/S12911-022-01770-4},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/midm/SlaterRMCKWFBHG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/npjdm/Wu0WFCS0PFLSHKG22,
  author       = {Honghan Wu and
                  Minhong Wang and
                  Jinge Wu and
                  Farah Francis and
                  Yun{-}Hsuan Chang and
                  Alex Shavick and
                  Hang Dong and
                  Michael Tin Chung Poon and
                  Natalie K. Fitzpatrick and
                  Adam P. Levine and
                  Luke T. Slater and
                  Alex Handy and
                  Andreas Karwath and
                  Georgios V. Gkoutos and
                  Claude Chelala and
                  Anoop D. Shah and
                  Robert Stewart and
                  Nigel Collier and
                  Beatrice Alex and
                  William Whiteley and
                  Cathie Sudlow and
                  Angus Roberts and
                  Richard J. B. Dobson},
  title        = {A survey on clinical natural language processing in the United Kingdom
                  from 2007 to 2022},
  journal      = {npj Digit. Medicine},
  volume       = {5},
  year         = {2022},
  url          = {https://doi.org/10.1038/s41746-022-00730-6},
  doi          = {10.1038/S41746-022-00730-6},
  timestamp    = {Tue, 05 Aug 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/npjdm/Wu0WFCS0PFLSHKG22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biomedsem/SlaterBBHG21,
  author       = {Luke T. Slater and
                  William Bradlow and
                  Simon Ball and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Improved characterisation of clinical text through ontology-based
                  vocabulary expansion},
  journal      = {J. Biomed. Semant.},
  volume       = {12},
  number       = {1},
  pages        = {7},
  year         = {2021},
  url          = {https://doi.org/10.1186/s13326-021-00241-5},
  doi          = {10.1186/S13326-021-00241-5},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SlaterBBHG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cbm/SlaterBMHBG21,
  author       = {Luke T. Slater and
                  William Bradlow and
                  Dino FA. Motti and
                  Robert Hoehndorf and
                  Simon Ball and
                  Georgios V. Gkoutos},
  title        = {A fast, accurate, and generalisable heuristic-based negation detection
                  algorithm for clinical text},
  journal      = {Comput. Biol. Medicine},
  volume       = {130},
  pages        = {104216},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compbiomed.2021.104216},
  doi          = {10.1016/J.COMPBIOMED.2021.104216},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/SlaterBMHBG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cbm/SlaterKWRMCHG21,
  author       = {Luke T. Slater and
                  Andreas Karwath and
                  John A. Williams and
                  Sophie Russell and
                  Silver Makepeace and
                  Alexander Carberry and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Towards similarity-based differential diagnostics for common diseases},
  journal      = {Comput. Biol. Medicine},
  volume       = {133},
  pages        = {104360},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compbiomed.2021.104360},
  doi          = {10.1016/J.COMPBIOMED.2021.104360},
  timestamp    = {Fri, 08 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cbm/SlaterKWRMCHG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cbm/PendletonSKGDPL21,
  author       = {Samantha C. Pendleton and
                  Luke T. Slater and
                  Andreas Karwath and
                  Rose M. Gilbert and
                  Nicola Davis and
                  Konrad Pesudovs and
                  Xiaoxuan Liu and
                  Alastair K. Denniston and
                  Georgios V. Gkoutos and
                  Tasanee Braithwaite},
  title        = {Development and application of the ocular immune-mediated inflammatory
                  diseases ontology enhanced with synonyms from online patient support
                  forum conversation},
  journal      = {Comput. Biol. Medicine},
  volume       = {135},
  pages        = {104542},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compbiomed.2021.104542},
  doi          = {10.1016/J.COMPBIOMED.2021.104542},
  timestamp    = {Fri, 04 Jul 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/PendletonSKGDPL21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/cbm/SlaterWKFBSHG21,
  author       = {Luke T. Slater and
                  John A. Williams and
                  Andreas Karwath and
                  Hilary Fanning and
                  Simon Ball and
                  Paul N. Schofield and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Multi-faceted semantic clustering with text-derived phenotypes},
  journal      = {Comput. Biol. Medicine},
  volume       = {138},
  pages        = {104904},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compbiomed.2021.104904},
  doi          = {10.1016/J.COMPBIOMED.2021.104904},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cbm/SlaterWKFBSHG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/fdgth/SlaterKHG21,
  author       = {Luke T. Slater and
                  Andreas Karwath and
                  Robert Hoehndorf and
                  Georgios V. Gkoutos},
  title        = {Effects of Negation and Uncertainty Stratification on Text-Derived
                  Patient Profile Similarity},
  journal      = {Frontiers Digit. Health},
  volume       = {3},
  pages        = {781227},
  year         = {2021},
  url          = {https://doi.org/10.3389/fdgth.2021.781227},
  doi          = {10.3389/FDGTH.2021.781227},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/fdgth/SlaterKHG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/bibm/Slater0SG21,
  author       = {Luke T. Slater and
                  John A. Williams and
                  Paul N. Schofield and
                  Georgios V. Gkoutos},
  editor       = {Yufei Huang and
                  Lukasz A. Kurgan and
                  Feng Luo and
                  Xiaohua Hu and
                  Yidong Chen and
                  Edward R. Dougherty and
                  Andrzej Kloczkowski and
                  Yaohang Li},
  title        = {Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies},
  booktitle    = {{IEEE} International Conference on Bioinformatics and Biomedicine,
                  {BIBM} 2021, Houston, TX, USA, December 9-12, 2021},
  pages        = {1826--1834},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/BIBM52615.2021.9669329},
  doi          = {10.1109/BIBM52615.2021.9669329},
  timestamp    = {Tue, 20 Aug 2024 07:54:45 +0200},
  biburl       = {https://dblp.org/rec/conf/bibm/Slater0SG21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ao/SantiagoGWSG20,
  author       = {Fernando Javier Mart{\'{\i}}nez Santiago and
                  Rosario Garc{\'{\i}}a{-}Viedma and
                  John A. Williams and
                  Luke T. Slater and
                  Georgios V. Gkoutos},
  title        = {Aging Neuro-Behavior Ontology},
  journal      = {Appl. Ontology},
  volume       = {15},
  number       = {2},
  pages        = {219--239},
  year         = {2020},
  url          = {https://doi.org/10.3233/AO-200229},
  doi          = {10.3233/AO-200229},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ao/SantiagoGWSG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/midm/SlaterGH20,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Robert Hoehndorf},
  title        = {Towards semantic interoperability: finding and repairing hidden contradictions
                  in biomedical ontologies},
  journal      = {{BMC} Medical Informatics Decis. Mak.},
  volume       = {20-S},
  number       = {10},
  pages        = {311},
  year         = {2020},
  url          = {https://doi.org/10.1186/s12911-020-01336-2},
  doi          = {10.1186/S12911-020-01336-2},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/midm/SlaterGH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biomedsem/SlaterGSH16,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  title        = {Using AberOWL for fast and scalable reasoning over BioPortal ontologies},
  journal      = {J. Biomed. Semant.},
  volume       = {7},
  pages        = {49},
  year         = {2016},
  url          = {https://doi.org/10.1186/s13326-016-0090-0},
  doi          = {10.1186/S13326-016-0090-0},
  timestamp    = {Mon, 03 Jan 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/biomedsem/SlaterGSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icbo/Rodriguez-Garcia16,
  author       = {Miguel {\'{A}}ngel Rodr{\'{\i}}guez{-}Garc{\'{\i}}a and
                  Luke T. Slater and
                  Imane Boudellioua and
                  Paul N. Schofield and
                  Georgios V. Gkoutos and
                  Robert Hoehndorf},
  editor       = {Pankaj Jaiswal and
                  Robert Hoehndorf and
                  Cecilia N. Arighi and
                  Austin Meier},
  title        = {Updates to the AberOWL Ontology Repository},
  booktitle    = {Proceedings of the Joint International Conference on Biological Ontology
                  and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1747},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1747/D104\_ICBO2016.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:23 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/Rodriguez-Garcia16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icbo/SlaterGSH16,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  editor       = {Pankaj Jaiswal and
                  Robert Hoehndorf and
                  Cecilia N. Arighi and
                  Austin Meier},
  title        = {To {MIREOT} or not to MIREOT? {A} Case Study of the Impact of Using
                  {MIREOT} in the Experimental Factor Ontology {(EFO)}},
  booktitle    = {Proceedings of the Joint International Conference on Biological Ontology
                  and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1747},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1747/IT702\_ICBO2016.pdf},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/SlaterGSH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/HoehndorfSSG15,
  author       = {Robert Hoehndorf and
                  Luke T. Slater and
                  Paul N. Schofield and
                  Georgios V. Gkoutos},
  title        = {Aber-OWL: a framework for ontology-based data access in biology},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {26:1--26:9},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0456-9},
  doi          = {10.1186/S12859-015-0456-9},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HoehndorfSSG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icbo/SlaterGSH15,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  editor       = {Francisco M. Couto and
                  Janna Hastings},
  title        = {Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies},
  booktitle    = {Proceedings of the International Conference on Biomedical Ontology,
                  {ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1515},
  publisher    = {CEUR-WS.org},
  year         = {2015},
  url          = {https://ceur-ws.org/Vol-1515/regular15.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:24 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/SlaterGSH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/icbo/SlaterGSH15a,
  author       = {Luke T. Slater and
                  Georgios V. Gkoutos and
                  Paul N. Schofield and
                  Robert Hoehndorf},
  editor       = {Francisco M. Couto and
                  Janna Hastings},
  title        = {AberOWL: an ontology portal with {OWL} {EL} reasoning},
  booktitle    = {Proceedings of the International Conference on Biomedical Ontology,
                  {ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1515},
  publisher    = {CEUR-WS.org},
  year         = {2015},
  url          = {https://ceur-ws.org/Vol-1515/demo4.pdf},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/icbo/SlaterGSH15a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/owled/SlaterROSGH15,
  author       = {Luke T. Slater and
                  Miguel {\'{A}}ngel Rodr{\'{\i}}guez{-}Garc{\'{\i}}a and
                  Keiron O'Shea and
                  Paul N. Schofield and
                  Georgios V. Gkoutos and
                  Robert Hoehndorf},
  editor       = {Valentina Tamma and
                  Mauro Dragoni and
                  Rafael S. Gon{\c{c}}alves and
                  Agnieszka Lawrynowicz},
  title        = {Experiences with Aber-OWL, an Ontology Repository with {OWL} {EL}
                  Reasoning},
  booktitle    = {Ontology Engineering - 12th International Experiences and Directions
                  Workshop on OWL, {OWLED} 2015, co-located with {ISWC} 2015, Bethlehem,
                  PA, USA, October 9-10, 2015, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {9557},
  pages        = {81--86},
  publisher    = {Springer},
  year         = {2015},
  url          = {https://doi.org/10.1007/978-3-319-33245-1\_8},
  doi          = {10.1007/978-3-319-33245-1\_8},
  timestamp    = {Mon, 03 Mar 2025 21:19:37 +0100},
  biburl       = {https://dblp.org/rec/conf/owled/SlaterROSGH15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/swat4ls/Rodriguez-Garcia15,
  author       = {Miguel {\'{A}}ngel Rodr{\'{\i}}guez{-}Garc{\'{\i}}a and
                  Luke T. Slater and
                  Keiron O'Shea and
                  Paul N. Schofield and
                  Georgios V. Gkoutos and
                  Robert Hoehndorf},
  editor       = {James Malone and
                  Robert Stevens and
                  Kerstin Forsberg and
                  Andrea Splendiani},
  title        = {Visualising Ontologies with AberOWL},
  booktitle    = {Proceedings of the 8th Semantic Web Applications and Tools for Life
                  Sciences International Conference, Cambridge UK, December 7-10, 2015},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1546},
  pages        = {183--192},
  publisher    = {CEUR-WS.org},
  year         = {2015},
  url          = {https://ceur-ws.org/Vol-1546/poster\_33.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:03 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/Rodriguez-Garcia15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/swat4ls/HoehndorfSSG14,
  author       = {Robert Hoehndorf and
                  Luke T. Slater and
                  Paul N. Schofield and
                  Georgios V. Gkoutos},
  editor       = {Adrian Paschke and
                  Albert Burger and
                  Paolo Romano and
                  M. Scott Marshall and
                  Andrea Splendiani},
  title        = {Aber-OWL: {A} Framework for Ontology-based Data Access in Biology},
  booktitle    = {Proceedings of the 7th International Workshop on Semantic Web Applications
                  and Tools for Life Sciences, Berlin, Germany, December 9-11, 2014},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1320},
  publisher    = {CEUR-WS.org},
  year         = {2014},
  url          = {https://ceur-ws.org/Vol-1320/paper\_1.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/HoehndorfSSG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/HoehndorfSSG14,
  author       = {Robert Hoehndorf and
                  Luke T. Slater and
                  Paul N. Schofield and
                  Georgios V. Gkoutos},
  title        = {Aber-OWL: a framework for ontology-based data access in biology},
  journal      = {CoRR},
  volume       = {abs/1407.6812},
  year         = {2014},
  url          = {http://arxiv.org/abs/1407.6812},
  eprinttype    = {arXiv},
  eprint       = {1407.6812},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/HoehndorfSSG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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