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ORCIDBibTeX records: Birgit Ertl-Wagner
@article{DBLP:journals/bmcmi/NamdarWEK25,
author = {Khashayar Namdar and
Matthias W. Wagner and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Open-radiomics: a collection of standardized datasets and a technical
protocol for reproducible radiomics machine learning pipelines},
journal = {{BMC} Medical Imaging},
volume = {25},
number = {1},
pages = {312},
year = {2025},
url = {https://doi.org/10.1186/s12880-025-01855-2},
doi = {10.1186/S12880-025-01855-2},
timestamp = {Thu, 25 Sep 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcmi/NamdarWEK25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cbm/ZhouWTHEK25,
author = {Meng Zhou and
Matthias W. Wagner and
Uri Tabori and
Cynthia Hawkins and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Generating 3D brain tumor regions in {MRI} using vector-quantization
Generative Adversarial Networks},
journal = {Comput. Biol. Medicine},
volume = {185},
pages = {109502},
year = {2025},
url = {https://doi.org/10.1016/j.compbiomed.2024.109502},
doi = {10.1016/J.COMPBIOMED.2024.109502},
timestamp = {Fri, 07 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cbm/ZhouWTHEK25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frai/RafiqueLGBMMLOTSEK25,
author = {Daniel Rafique and
Xuan Liu and
Bo Gong and
Laura Belsito and
Melissa D. McCradden and
Mjaye L. Mazwi and
Wayne Lee and
Graham Ohanlon and
Kyle Tsang and
Manohar Shroff and
Birgit Ertl{-}Wagner and
Farzad Khalvati},
title = {Predicting pediatric diagnostic imaging patient no-show and extended
wait-times using LLMs, regression, and tree based models},
journal = {Frontiers Artif. Intell.},
volume = {8},
year = {2025},
url = {https://doi.org/10.3389/frai.2025.1652397},
doi = {10.3389/FRAI.2025.1652397},
timestamp = {Tue, 13 Jan 2026 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/frai/RafiqueLGBMMLOTSEK25.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/ZhaoKKNWEK24,
author = {Chen Zhao and
Kareem Kudus and
Sara Ketabi and
Khashayar Namdar and
Matthias W. Wagner and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Improving Interpretability of Radiology Report-based Pediatric Brain
Tumor Pathology Classification and Key-phrases Extraction Using Large
Language Models},
booktitle = {{IEEE} {EMBS} International Conference on Biomedical and Health Informatics,
{BHI} 2024, Houston, TX, USA, November 10-13, 2024},
pages = {1--8},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/BHI62660.2024.10913641},
doi = {10.1109/BHI62660.2024.10913641},
timestamp = {Thu, 08 May 2025 15:14:16 +0200},
biburl = {https://dblp.org/rec/conf/bhi/ZhaoKKNWEK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/ChenNWEK24,
author = {Chaojun Chen and
Khashayar Namdar and
Matthias W. Wagner and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Anomaly Detection in Pediatric and Adults Brain {MRI} with Generative
Model},
booktitle = {46th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2024, Orlando, FL, USA, July
15-19, 2024},
pages = {1--6},
publisher = {{IEEE}},
year = {2024},
url = {https://doi.org/10.1109/EMBC53108.2024.10782602},
doi = {10.1109/EMBC53108.2024.10782602},
timestamp = {Sun, 02 Nov 2025 21:27:08 +0100},
biburl = {https://dblp.org/rec/conf/embc/ChenNWEK24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2402-03547,
author = {Khashayar Namdar and
Matthias W. Wagner and
Cynthia Hawkins and
Uri Tabori and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Improving Pediatric Low-Grade Neuroepithelial Tumors Molecular Subtype
Identification Using a Novel {AUROC} Loss Function for Convolutional
Neural Networks},
journal = {CoRR},
volume = {abs/2402.03547},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2402.03547},
doi = {10.48550/ARXIV.2402.03547},
eprinttype = {arXiv},
eprint = {2402.03547},
timestamp = {Thu, 15 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2402-03547.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2411-00609,
author = {Sara Ketabi and
Matthias W. Wagner and
Cynthia Hawkins and
Uri Tabori and
Birgit Betina Ertl{-}Wagner and
Farzad Khalvati},
title = {Tumor Location-weighted MRI-Report Contrastive Learning: {A} Framework
for Improving the Explainability of Pediatric Brain Tumor Diagnosis},
journal = {CoRR},
volume = {abs/2411.00609},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2411.00609},
doi = {10.48550/ARXIV.2411.00609},
eprinttype = {arXiv},
eprint = {2411.00609},
timestamp = {Wed, 01 Jan 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2411-00609.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bspc/LimLWES23,
author = {Adam Lim and
Justin Lo and
Matthias W. Wagner and
Birgit Ertl{-}Wagner and
Dafna Sussman},
title = {Motion artifact correction in fetal {MRI} based on a Generative Adversarial
network method},
journal = {Biomed. Signal Process. Control.},
volume = {81},
pages = {104484},
year = {2023},
url = {https://doi.org/10.1016/j.bspc.2022.104484},
doi = {10.1016/J.BSPC.2022.104484},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bspc/LimLWES23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2310-01251,
author = {Meng Zhou and
Matthias W. Wagner and
Uri Tabori and
Cynthia Hawkins and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {Generating 3D Brain Tumor Regions in {MRI} using Vector-Quantization
Generative Adversarial Networks},
journal = {CoRR},
volume = {abs/2310.01251},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2310.01251},
doi = {10.48550/ARXIV.2310.01251},
eprinttype = {arXiv},
eprint = {2310.01251},
timestamp = {Wed, 18 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2310-01251.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frai/LimLWES22,
author = {Adam Lim and
Justin Lo and
Matthias W. Wagner and
Birgit Ertl{-}Wagner and
Dafna Sussman},
title = {Automatic Artifact Detection Algorithm in Fetal {MRI}},
journal = {Frontiers Artif. Intell.},
volume = {5},
year = {2022},
url = {https://doi.org/10.3389/frai.2022.861791},
doi = {10.3389/FRAI.2022.861791},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/frai/LimLWES22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/frai/LoLWES22,
author = {Justin Lo and
Adam Lim and
Matthias W. Wagner and
Birgit Ertl{-}Wagner and
Dafna Sussman},
title = {Fetal Organ Anomaly Classification Network for Identifying Organ Anomalies
in Fetal {MRI}},
journal = {Frontiers Artif. Intell.},
volume = {5},
pages = {832485},
year = {2022},
url = {https://doi.org/10.3389/frai.2022.832485},
doi = {10.3389/FRAI.2022.832485},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/frai/LoLWES22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/VafaeikiaWHTEK22,
author = {Partoo Vafaeikia and
Matthias W. Wagner and
Cynthia Hawkins and
Uri Tabori and
Birgit Ertl{-}Wagner and
Farzad Khalvati},
title = {Improving the Segmentation of Pediatric Low-Grade Gliomas Through
Multitask Learning},
booktitle = {44th Annual International Conference of the {IEEE} Engineering in
Medicine {\&} Biology Society, {EMBC} 2022, Glasgow, Scotland,
United Kingdom, July 11-15, 2022},
pages = {2119--2122},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/EMBC48229.2022.9871627},
doi = {10.1109/EMBC48229.2022.9871627},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/VafaeikiaWHTEK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-14776,
author = {Ernest Namdar and
Matthias W. Wagner and
Birgit Ertl{-}Wagner and
Farzad Khalvati},
title = {Open-radiomics: {A} Research Protocol to Make Radiomics-based Machine
Learning Pipelines Reproducible},
journal = {CoRR},
volume = {abs/2207.14776},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.14776},
doi = {10.48550/ARXIV.2207.14776},
eprinttype = {arXiv},
eprint = {2207.14776},
timestamp = {Tue, 02 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-14776.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2210-07287,
author = {Khashayar Namdar and
Matthias W. Wagner and
Kareem Kudus and
Cynthia Hawkins and
Uri Tabori and
Birgit Ertl{-}Wagner and
Farzad Khalvati},
title = {Tumor-location-guided CNNs for Pediatric Low-grade Glioma Molecular
Biomarker Classification Using {MRI}},
journal = {CoRR},
volume = {abs/2210.07287},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2210.07287},
doi = {10.48550/ARXIV.2210.07287},
eprinttype = {arXiv},
eprint = {2210.07287},
timestamp = {Tue, 18 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2210-07287.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2211-05269,
author = {Jay J. Yoo and
Khashayar Namdar and
Matthias W. Wagner and
Liana Nobre and
Uri Tabori and
Cynthia Hawkins and
Birgit B. Ertl{-}Wagner and
Farzad Khalvati},
title = {A novel GAN-based paradigm for weakly supervised brain tumor segmentation
of {MR} images},
journal = {CoRR},
volume = {abs/2211.05269},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2211.05269},
doi = {10.48550/ARXIV.2211.05269},
eprinttype = {arXiv},
eprint = {2211.05269},
timestamp = {Wed, 16 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2211-05269.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/LoNCYCKWAMSES21,
author = {Justin Lo and
Saiee Nithiyanantham and
Jillian Cardinell and
Dylan Young and
Sherwin Cho and
Abirami Kirubarajan and
Matthias W. Wagner and
Roxana Azma and
Steven Miller and
Mike Seed and
Birgit Ertl{-}Wagner and
Dafna Sussman},
title = {Cross Attention Squeeze Excitation Network (CASE-Net) for Whole Body
Fetal {MRI} Segmentation},
journal = {Sensors},
volume = {21},
number = {13},
pages = {4490},
year = {2021},
url = {https://doi.org/10.3390/s21134490},
doi = {10.3390/S21134490},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/LoNCYCKWAMSES21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-14959,
author = {Partoo Vafaeikia and
Matthias W. Wagner and
Uri Tabori and
Birgit Ertl{-}Wagner and
Farzad Khalvati},
title = {Improving the Segmentation of Pediatric Low-Grade Gliomas through
Multitask Learning},
journal = {CoRR},
volume = {abs/2111.14959},
year = {2021},
url = {https://arxiv.org/abs/2111.14959},
eprinttype = {arXiv},
eprint = {2111.14959},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-14959.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-10294,
author = {Martin Dyrba and
Moritz Hanzig and
Slawek Altenstein and
Sebastian Bader and
Tommaso Ballarini and
Frederic Brosseron and
Katharina Buerger and
Daniel Cantr{\'{e}} and
Peter Dechent and
Laura Dobisch and
Emrah D{\"{u}}zel and
Michael Ewers and
Klaus Fliessbach and
Wenzel Glanz and
John D. Haynes and
Michael T. Heneka and
Daniel Janowitz and
Deniz Baris Keles and
Ingo Kilimann and
Christoph Laske and
Franziska Maier and
Coraline D. Metzger and
Matthias H. Munk and
Robert Perneczky and
Oliver Peters and
Lukas Preis and
Josef Priller and
Boris Rauchmann and
Nina Roy and
Klaus Scheffler and
Anja Schneider and
Bj{\"{o}}rn H. Schott and
Annika Spottke and
Eike J. Spruth and
Marc{-}Andr{\'{e}} Weber and
Birgit Ertl{-}Wagner and
Michael Wagner and
Jens Wiltfang and
Frank Jessen and
Stefan J. Teipel},
title = {Improving 3D convolutional neural network comprehensibility via interactive
visualization of relevance maps: Evaluation in Alzheimer's disease},
journal = {CoRR},
volume = {abs/2012.10294},
year = {2020},
url = {https://arxiv.org/abs/2012.10294},
eprinttype = {arXiv},
eprint = {2012.10294},
timestamp = {Mon, 26 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-10294.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/KirschBKKEBD18,
author = {Valerie Kirsch and
Rainer Boegle and
Daniel Keeser and
E. Kierig and
Birgit Ertl{-}Wagner and
Thomas Brandt and
Marianne Dieterich},
title = {Handedness-dependent functional organizational patterns within the
bilateral vestibular cortical network revealed by fMRI connectivity
based parcellation},
journal = {NeuroImage},
volume = {178},
pages = {224--237},
year = {2018},
url = {https://doi.org/10.1016/j.neuroimage.2018.05.018},
doi = {10.1016/J.NEUROIMAGE.2018.05.018},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/KirschBKKEBD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cviu/MilletariAKPRML17,
author = {Fausto Milletari and
Seyed{-}Ahmad Ahmadi and
Christine Kroll and
Annika Plate and
Verena E. Rozanski and
Juliana Maiostre and
Johannes Levin and
Olaf Dietrich and
Birgit Ertl{-}Wagner and
Kai B{\"{o}}tzel and
Nassir Navab},
title = {Hough-CNN: Deep learning for segmentation of deep brain regions in
{MRI} and ultrasound},
journal = {Comput. Vis. Image Underst.},
volume = {164},
pages = {92--102},
year = {2017},
url = {https://doi.org/10.1016/j.cviu.2017.04.002},
doi = {10.1016/J.CVIU.2017.04.002},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cviu/MilletariAKPRML17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/WorschingPHHKGS17,
author = {Jana W{\"{o}}rsching and
Frank Padberg and
Konstantin Helbich and
Alkomiet Hasan and
Lena Koch and
Stephan Goerigk and
Sophia St{\"{o}}cklein and
Birgit Ertl{-}Wagner and
Daniel Keeser},
title = {Test-retest reliability of prefrontal transcranial Direct Current
Stimulation (tDCS) effects on functional {MRI} connectivity in healthy
subjects},
journal = {NeuroImage},
volume = {155},
pages = {187--201},
year = {2017},
url = {https://doi.org/10.1016/j.neuroimage.2017.04.052},
doi = {10.1016/J.NEUROIMAGE.2017.04.052},
timestamp = {Mon, 20 Apr 2026 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/WorschingPHHKGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/MilletariAKPRML16,
author = {Fausto Milletari and
Seyed{-}Ahmad Ahmadi and
Christine Kroll and
Annika Plate and
Verena E. Rozanski and
Juliana Maiostre and
Johannes Levin and
Olaf Dietrich and
Birgit Ertl{-}Wagner and
Kai B{\"{o}}tzel and
Nassir Navab},
title = {Hough-CNN: Deep Learning for Segmentation of Deep Brain Regions in
{MRI} and Ultrasound},
journal = {CoRR},
volume = {abs/1601.07014},
year = {2016},
url = {http://arxiv.org/abs/1601.07014},
eprinttype = {arXiv},
eprint = {1601.07014},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/MilletariAKPRML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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