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ORCIDYiqin Gao
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2020 – today
- 2026
[j16]Chuanliu Fan
, Zicheng Ma, Wenjie Du, Nan Yu, Jun Zhang, Yi Qin Gao, Ziqiang Cao, Guohong Fu:
Bidirectional GPT. Inf. Process. Manag. 63(2): 104451 (2026)- [i15]Chuanliu Fan, Zicheng Ma, Huanran Meng, Aijia Zhang, Wenjie Du, Jun Zhang, Yi Qin Gao, Ziqiang Cao, Guohong Fu:
Interleaved Tool-Call Reasoning for Protein Function Understanding. CoRR abs/2601.03604 (2026) - [i14]Yanheng Li, Zhichen Pu, Lijiang Yang, Zehao Zhou, Yi Qin Gao:
Multi-objective fluorescent molecule design with a data-physics dual-driven generative framework. CoRR abs/2601.13564 (2026) - 2025
- [j15]Zhicong Wang, Zicheng Ma, Ziqiang Cao, Changlong Zhou, Jun Zhang, Yi Qin Gao:
Prot2Chat: protein large language model with early fusion of text, sequence, and structure. Bioinform. 41(8) (2025) - [j14]Hao Zhang, Yun Zhou, Huahu Xu, Jiangang Shi, Xinhua Lin, Yiqin Gao:
Graph neural network approach with spatial structure to anomaly detection of network data. J. Big Data 12(1): 105 (2025) - [j13]Zicheng Ma, Chuanliu Fan, Zhicong Wang, Zhenyu Chen, Xiaohan Lin, Yanheng Li, Shihao Feng, Ziqiang Cao, Jun Zhang, Yi Qin Gao:
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models. J. Chem. Inf. Model. 65(13): 6599-6612 (2025) - [j12]Piya Patra, Yi Qin Gao:
Structural and Thermodynamic Insights into Competitive Binding of the EGR1 and Sp1 Zinc Finger Class of Transcription Factors with a GC-Rich DNA Motif. J. Chem. Inf. Model. 65(21): 11988-12005 (2025) - [j11]Tanfeng Zhao, Yi Qin Gao:
Shotgun Approach for PROTAC Ternary Complex Modeling and Evaluation. J. Chem. Inf. Model. 65(23): 12929-12944 (2025) - [i13]Zhicong Wang, Zicheng Ma, Ziqiang Cao, Changlong Zhou, Jun Zhang, Yiqin Gao:
Prot2Chat: Protein LLM with Early Fusion of Sequence and Structure. CoRR abs/2502.06846 (2025) - [i12]Chuanliu Fan, Ziqiang Cao, Zicheng Ma, Nan Yu, Yimin Peng, Jun Zhang, Yiqin Gao, Guohong Fu:
ChatMol: A Versatile Molecule Designer Based on the Numerically Enhanced Large Language Model. CoRR abs/2502.19794 (2025) - [i11]Zicheng Ma, Chuanliu Fan, Zhicong Wang, Zhenyu Chen, Xiaohan Lin, Yanheng Li, Shihao Feng, Jun Zhang, Ziqiang Cao, Yi Qin Gao:
ProtTeX: Structure-In-Context Reasoning and Editing of Proteins with Large Language Models. CoRR abs/2503.08179 (2025) - [i10]Chuanliu Fan, Zicheng Ma, Jun Gao, Nan Yu, Jun Zhang, Ziqiang Cao, Yi Qin Gao, Guohong Fu:
ProtTeX-CC: Activating In-Context Learning in Protein LLM via Two-Stage Instruction Compression. CoRR abs/2508.12212 (2025) - 2024
- [j10]Yiqin Gao, Li Han, Jing Liu, Yves Robert, Frédéric Vivien:
Minimizing Energy Consumption for Real-Time Tasks on Heterogeneous Platforms Under Deadline and Reliability Constraints. Algorithmica 86(10): 3079-3114 (2024) - [j9]Chengwei Dong, Yupeng Huang, Xiaohan Lin, Hong Zhang, Yi Qin Gao:
DSDPFlex: Flexible-Receptor Docking with GPU Acceleration. J. Chem. Inf. Model. 64(22): 8537-8548 (2024) - [j8]Shihao Feng, Zhenyu Chen, Chengwei Zhang, Yuhao Xie, Sergey Ovchinnikov, Yi Qin Gao, Sirui Liu:
Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock. Nat. Mac. Intell. 6(8): 924-935 (2024) - [j7]Shihao Feng, Zhenyu Chen, Chengwei Zhang, Yuhao Xie, Sergey Ovchinnikov, Yi Qin Gao, Sirui Liu:
Author Correction: Integrated structure prediction of protein-protein docking with experimental restraints using ColabDock. Nat. Mac. Intell. 6(10): 1270 (2024) - [c5]Bowen Qiang, Yun Zhou, Huahu Xu, Jiangang Shi, James Lin, Yiqin Gao:
MI-GNN: Multi-Interaction GNN for Various Weak Information Learning on Graphs. IJCNN 2024: 1-9 - [i9]Sihao Yuan, Xu Han, Zhaoxin Xie, Cheng Fan, Yi Isaac Yang, Yi Qin Gao:
Generating High-Precision Force Fields for Molecular Dynamics Simulations to Study Chemical Reaction Mechanisms using Molecular Configuration Transformer. CoRR abs/2401.00499 (2024) - 2023
- [j6]Yiqin Gao, Yves Robert, Frédéric Vivien:
Resource-Constrained Scheduling Algorithms for Stochastic Independent Tasks With Unknown Probability Distribution. Algorithmica 85(8): 2363-2394 (2023) - [j5]Manas Mondal, Srabani Chakrabarty, Yi Qin Gao, Dhananjay Bhattacharyya, Jaydeb Chakrabarti:
Microscopic model on indoor propagation of respiratory droplets. Comput. Biol. Chem. 102: 107806 (2023) - [j4]Yupeng Huang, Hong Zhang, Siyuan Jiang, Dajiong Yue, Xiaohan Lin, Jun Zhang, Yi Qin Gao:
DSDP: A Blind Docking Strategy Accelerated by GPUs. J. Chem. Inf. Model. 63(14): 4355-4363 (2023) - [j3]Yiqin Gao, Guillaume Pallez, Yves Robert, Frédéric Vivien:
Dynamic Scheduling Strategies for Firm Semi-Periodic Real-Time Tasks. IEEE Trans. Computers 72(1): 55-68 (2023) - [c4]Enze Ye, Yuhang Wang, Hong Zhang, Yiqin Gao, Huan Wang, He Sun:
Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies. ICCV 2023: 10733-10743 - [i8]Yupeng Huang, Hong Zhang, Siyuan Jiang, Dajiong Yue, Xiaohan Lin, Jun Zhang, Yi Qin Gao:
DSDP: A Blind Docking Strategy Accelerated by GPUs. CoRR abs/2303.09916 (2023) - [i7]Jun Zhang, Xiaohan Lin, Weinan E, Yi Qin Gao:
Machine-Learned Invertible Coarse Graining for Multiscale Molecular Modeling. CoRR abs/2305.01243 (2023) - [i6]Enze Ye, Yuhang Wang, Hong Zhang, Yiqin Gao, Huan Wang, He Sun:
Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies. CoRR abs/2308.11927 (2023) - 2022
- [j2]Yijie Xia, Yi Qin Gao:
Xponge: A Python package to perform pre- and post-processing of molecular simulations. J. Open Source Softw. 7(78): 4467 (2022) - [i5]Sirui Liu, Jun Zhang, Haotian Chu, Min Wang, Boxin Xue, Ningxi Ni, Jialiang Yu, Yuhao Xie, Zhenyu Chen, Mengyun Chen, Yuan Liu, Piya Patra, Fan Xu, Jie Chen, Zidong Wang, Lijiang Yang, Fan Yu, Lei Chen, Yi Qin Gao:
PSP: Million-level Protein Sequence Dataset for Protein Structure Prediction. CoRR abs/2206.12240 (2022) - [i4]Jun Zhang, Sirui Liu, Mengyun Chen, Haotian Chu, Min Wang, Zidong Wang, Jialiang Yu, Ningxi Ni, Fan Yu, Diqing Chen, Yi Isaac Yang, Boxin Xue, Lijiang Yang, Yuan Liu, Yi Qin Gao:
Few-Shot Learning of Accurate Folding Landscape for Protein Structure Prediction. CoRR abs/2208.09652 (2022) - 2021
- [b1]Yiqin Gao:
Scheduling independent tasks under budget and time constraints. (Ordonnancement de tâches indépendantes sous contraintes budgédaire et temporelle). University of Lyon, France, 2021 - [c3]Yiqin Gao, Guillaume Pallez, Yves Robert, Frédéric Vivien:
Work-in-Progress: Evaluating Task Dropping Strategies for Overloaded Real-Time Systems. RTSS 2021: 528-531 - 2020
- [j1]Hao Tian, Ying Yang, Sirui Liu, Hui Quan, Yi Qin Gao:
Toward an understanding of the relation between gene regulation and 3D genome organization. Quant. Biol. 8(4): 295-311 (2020) - [c2]Li Han, Yiqin Gao, Jing Liu, Yves Robert, Frédéric Vivien:
Energy-aware strategies for reliability-oriented real-time task allocation on heterogeneous platforms. ICPP 2020: 16:1-16:11 - [i3]Jun Zhang, Yao-Kun Lei, Zhen Zhang, Junhan Chang, Maodong Li, Xu Han, Lijiang Yang, Yi Isaac Yang, Yi Qin Gao:
A Perspective on Deep Learning for Molecular Modeling and Simulations. CoRR abs/2004.13011 (2020) - [i2]Jun Zhang, Yao-Kun Lei, Zhen Zhang, Xu Han, Maodong Li, Lijiang Yang, Yi Isaac Yang, Yi Qin Gao:
Deep Reinforcement Learning of Transition States. CoRR abs/2011.06700 (2020) - [i1]Jun Zhang, Yaqiang Zhou, Yao-Kun Lei, Yi Isaac Yang, Yi Qin Gao:
Molecular CT: Unifying Geometry and Representation Learning for Molecules at Different Scales. CoRR abs/2012.11816 (2020)
2010 – 2019
- 2019
- [c1]Yiqin Gao, Louis-Claude Canon, Yves Robert, Frédéric Vivien:
Scheduling independent stochastic tasks on heterogeneous cloud platforms. CLUSTER 2019: 1-11
Coauthor Index
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