Identifying Protein-Nucleotide Binding Residues via Grouped Multi-task Learning and Pre-trained Protein Language Models.

Jia-Shun Wu Jiashun Wu

Jiashun Wu Yan Liu 0038 Ying Zhang 0053 Xiaoyu Wang 0016 He Yan Yiheng Zhu 0001 Jiangning Song Dong-Jun Yu Identifying Protein-Nucleotide Binding Residues via Grouped Multi-task Learning and Pre-trained Protein Language Models. 1040-1052 2025 65 J. Chem. Inf. Model. 2 https://doi.org/10.1021/acs.jcim.4c02092 db/journals/jcisd/jcisd65.html#WuLZWYZSY25 streams/journals/jcisd

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Jiashun Wu Fang Ge Shanruo Xu Yan Liu 0038 Jiangning Song Dong-Jun Yu Identification of Protein-Nucleotide Binding Residues With Deep Multi-Task and Multi-Scale Learning. 5329-5338 2025 July 29 IEEE J. Biomed. Health Informatics 7 https://doi.org/10.1109/JBHI.2025.3547386 db/journals/titb/titb29.html#WuGXLSY25 streams/journals/titb

Jia-Shun Wu Yan Liu 0038 Fang Ge Dong-Jun Yu Prediction of protein-ATP binding residues using multi-view feature learning via contextual-based co-attention network. 108227 2024 172 Comput. Biol. Medicine https://doi.org/10.1016/j.compbiomed.2024.108227 db/journals/cbm/cbm172.html#WuLGY24

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Jiashun Wu Yan Liu 0038 Yiheng Zhu 0001 Dong-Jun Yu Improving Antifreeze Proteins Prediction With Protein Language Models and Hybrid Feature Extraction Networks. 2349-2358 2024 November - December 21 IEEE ACM Trans. Comput. Biol. Bioinform. 6 https://doi.org/10.1109/TCBB.2024.3467261 db/journals/tcbb/tcbb21.html#WuLZY24 streams/journals/tcbb

Dijun Chen Robin B. Gasser Fang Ge Xiaohui Guo Qi Hong Weiqiang Hong Yingying Huang Heng Jin Chen Li 0021 Yan Liu 0038 Zhiming Liu Qiang Long Hong Qiu Hua Ru Long-Chen Shen Jiangning Song Hongtao Tan Hao Tong Renfang Wang Xiaoyu Wang 0016 Guo Wei LiMing Wu Shanruo Xu Yaohua Xu He Yan Dongjun YuDong-Jun Yu Yuxing Zha Tianxu Zhang Ying Zhang 0053 Yunong Zhao Ziyuan Zhou Xiaowen Zhu Yiheng Zhu 0001