BibTeX records: Gergely Csaba

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@article{DBLP:journals/bib/GeistlingerCSRS21,
  author       = {Ludwig Geistlinger and
                  Gergely Csaba and
                  Mara Santarelli and
                  Marcel Ramos and
                  Lucas Schiffer and
                  Nitesh Turaga and
                  Charity W. Law and
                  Sean Davis and
                  Vincent J. Carey and
                  Martin Morgan and
                  Ralf Zimmer and
                  Levi Waldron},
  title        = {Toward a gold standard for benchmarking gene set enrichment analysis},
  journal      = {Briefings Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {545--556},
  year         = {2021},
  url          = {https://doi.org/10.1093/bib/bbz158},
  doi          = {10.1093/BIB/BBZ158},
  timestamp    = {Thu, 01 May 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/GeistlingerCSRS21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/biodb/BerchtoldCZ19,
  author       = {Evi Berchtold and
                  Gergely Csaba and
                  Ralf Zimmer},
  title        = {YESdb: integrative analysis of environmental stress in yeast},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2019},
  pages        = {baz023},
  year         = {2019},
  url          = {https://doi.org/10.1093/database/baz023},
  doi          = {10.1093/DATABASE/BAZ023},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/BerchtoldCZ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BerchtoldVGCFUT19,
  author       = {Evi Berchtold and
                  Martina Vetter and
                  Melanie G{\"{u}}ndert and
                  Gergely Csaba and
                  Christine Fathke and
                  Susanne E. Ulbrich and
                  Christoph Thomssen and
                  Ralf Zimmer and
                  Eva J. Kantelhardt},
  title        = {Comparison of six breast cancer classifiers using qPCR},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {18},
  pages        = {3412--3420},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz103},
  doi          = {10.1093/BIOINFORMATICS/BTZ103},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BerchtoldVGCFUT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BerchtoldCZ17,
  author       = {Evi Berchtold and
                  Gergely Csaba and
                  Ralf Zimmer},
  title        = {RelExplain - integrating data and networks to explain biological processes},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {12},
  pages        = {1837--1844},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx060},
  doi          = {10.1093/BIOINFORMATICS/BTX060},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BerchtoldCZ17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/GeistlingerCZ16,
  author       = {Ludwig Geistlinger and
                  Gergely Csaba and
                  Ralf Zimmer},
  title        = {Bioconductor's EnrichmentBrowser: seamless navigation through combined
                  results of set- {\&} network-based enrichment analysis},
  journal      = {{BMC} Bioinform.},
  volume       = {17},
  pages        = {45},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12859-016-0884-1},
  doi          = {10.1186/S12859-016-0884-1},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GeistlingerCZ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/BonfertKCZF15,
  author       = {Thomas Bonfert and
                  Evelyn Kirner and
                  Gergely Csaba and
                  Ralf Zimmer and
                  Caroline C. Friedel},
  title        = {ContextMap 2: fast and accurate context-based RNA-seq mapping},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {122:1--122:15},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0557-5},
  doi          = {10.1186/S12859-015-0557-5},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BonfertKCZF15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@phdthesis{DBLP:phd/dnb/Csaba13,
  author       = {Gergely Csaba},
  title        = {Context based bioinformatics},
  school       = {Ludwig Maximilians University Munich},
  year         = {2013},
  url          = {http://edoc.ub.uni-muenchen.de/15725/},
  urn          = {urn:nbn:de:bvb:19-157252},
  timestamp    = {Sat, 17 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/phd/dnb/Csaba13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/BonfertCZF12,
  author       = {Thomas Bonfert and
                  Gergely Csaba and
                  Ralf Zimmer and
                  Caroline C. Friedel},
  title        = {A context-based approach to identify the most likely mapping for RNA-seq
                  experiments},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  number       = {{S-6}},
  pages        = {S9},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-S6-S9},
  doi          = {10.1186/1471-2105-13-S6-S9},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BonfertCZF12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/GeistlingerCKMZ11,
  author       = {Ludwig Geistlinger and
                  Gergely Csaba and
                  Robert K{\"{u}}ffner and
                  Nicola J. Mulder and
                  Ralf Zimmer},
  title        = {From sets to graphs: towards a realistic enrichment analysis of transcriptomic
                  systems},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {13},
  pages        = {366--373},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr228},
  doi          = {10.1093/BIOINFORMATICS/BTR228},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GeistlingerCKMZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/CsabaZ10,
  author       = {Gergely Csaba and
                  Ralf Zimmer},
  title        = {Vorescore - fold recognition improved by rescoring of protein structure
                  models},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {18},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq369},
  doi          = {10.1093/BIOINFORMATICS/BTQ369},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CsabaZ10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/NaeemKCZ10,
  author       = {Haroon Naeem and
                  Robert K{\"{u}}ffner and
                  Gergely Csaba and
                  Ralf Zimmer},
  title        = {miRSel: Automated extraction of associations between microRNAs and
                  genes from the biomedical literature},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {135},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-135},
  doi          = {10.1186/1471-2105-11-135},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/NaeemKCZ10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/insk/BirzeleCEFKPWZ09,
  author       = {Fabian Birzele and
                  Gergely Csaba and
                  Florian Erhard and
                  Caroline C. Friedel and
                  Robert K{\"{u}}ffner and
                  Tobias Petri and
                  Lukas Windhager and
                  Ralf Zimmer},
  title        = {Algorithmische Systembiologie mit Petrinetzen - Von qualitativen zu
                  quantitativen Systemmodellen},
  journal      = {Inform. Spektrum},
  volume       = {32},
  number       = {4},
  pages        = {310--319},
  year         = {2009},
  url          = {https://doi.org/10.1007/s00287-009-0355-4},
  doi          = {10.1007/S00287-009-0355-4},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/insk/BirzeleCEFKPWZ09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/eccb/CsabaBZ08,
  author       = {Gergely Csaba and
                  Fabian Birzele and
                  Ralf Zimmer},
  title        = {Protein structure alignment considering phenotypic plasticity},
  booktitle    = {ECCB'08 Proceedings, Seventh European Conference on Computational
                  Biology, 22-26 September 2008, Cagliari, Italy},
  pages        = {98--104},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn271},
  doi          = {10.1093/BIOINFORMATICS/BTN271},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/eccb/CsabaBZ08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BirzeleGCZ07,
  author       = {Fabian Birzele and
                  Jan E. Gewehr and
                  Gergely Csaba and
                  Ralf Zimmer},
  title        = {Vorolign - fast structural alignment using Voronoi contacts},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {2},
  pages        = {205--211},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btl294},
  doi          = {10.1093/BIOINFORMATICS/BTL294},
  timestamp    = {Tue, 07 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BirzeleGCZ07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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