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Rui Yan 0001
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Publications
- 2025
[c242]Qizhi Pei, Rui Yan, Kaiyuan Gao, Jinhua Zhu, Lijun Wu:
3D-MolT5: Leveraging Discrete Structural Information for Molecule-Text Modeling. ICLR 2025- 2024
[c224]Qizhi Pei, Lijun Wu, Kaiyuan Gao, Xiaozhuan Liang, Yin Fang, Jinhua Zhu, Shufang Xie, Tao Qin, Rui Yan:
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning. ACL (Findings) 2024: 1216-1240
[i136]Qizhi Pei, Lijun Wu, Kaiyuan Gao, Xiaozhuan Liang, Yin Fang, Jinhua Zhu, Shufang Xie, Tao Qin, Rui Yan:
BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning. CoRR abs/2402.17810 (2024)
[i135]Qizhi Pei, Lijun Wu, Kaiyuan Gao, Jinhua Zhu, Yue Wang, Zun Wang, Tao Qin, Rui Yan:
Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey. CoRR abs/2403.01528 (2024)
[i119]Qizhi Pei, Lijun Wu, Kaiyuan Gao, Jinhua Zhu, Rui Yan:
3D-MolT5: Towards Unified 3D Molecule-Text Modeling with 3D Molecular Tokenization. CoRR abs/2406.05797 (2024)- 2023
[c176]Qizhi Pei, Wei Zhang, Jinhua Zhu, Kehan Wu, Kaiyuan Gao, Lijun Wu, Yingce Xia, Rui Yan:
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations. EMNLP 2023: 1102-1123
[c167]Qizhi Pei, Kaiyuan Gao, Lijun Wu, Jinhua Zhu, Yingce Xia, Shufang Xie, Tao Qin, Kun He, Tie-Yan Liu, Rui Yan:
FABind: Fast and Accurate Protein-Ligand Binding. NeurIPS 2023
[i79]Qizhi Pei, Kaiyuan Gao, Lijun Wu, Jinhua Zhu, Yingce Xia, Shufang Xie, Tao Qin, Kun He, Tie-Yan Liu, Rui Yan:
FABind: Fast and Accurate Protein-Ligand Binding. CoRR abs/2310.06763 (2023)
[i78]Qizhi Pei, Wei Zhang, Jinhua Zhu, Kehan Wu, Kaiyuan Gao, Lijun Wu, Yingce Xia, Rui Yan:
BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations. CoRR abs/2310.07276 (2023)

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