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ORCIDJunyi Li 0004
Person information
- affiliation: Harbin Institute of Technology (Shenzhen), School of Computer Science and Technology, Shenzhen, China
- affiliation: Harbin Institute of Technology (Shenzhen), Guangdong Provincial Key Laboratory of Novel Security Intelligence Technologies, Shenzhen, China
Other persons with the same name
- Junyi Li — disambiguation page
- Junyi Li 0001
![[0009-0007-0480-5593]](https://dblp.uni-trier.de/img/orcid-mark.12x12.png "0009-0007-0480-5593")
— City University of Hong Kong, Department of Data Science, Hong Kong (and 4 more) - Junyi Li 0002 — University of Maryland, Department of Computer Science, College Park, MD, USA
- Junyi Li 0003 — Qualcomm Technologies, Inc., Bridgewater, NJ, USA (and 1 more)
- Junyi Li 0005 — Harbin Institute of Technology, Harbin, China
- Junyi Li 0006 — Hong Kong University of Science and Technology (Guangzhou), AI Thrust, Guangzhou, China
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2020 – today
- 2025
[j24]Beibei Wang, Boyue Cui, Shiqu Chen, Xuan Wang, Yadong Wang, Junyi Li:
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagation. Bioinform. 41(5) (2025)- [c11]Yuhuan Zhou, Yaqiu Wang, Yulin Wu, Qian Chen, Weiwei Yuan, Xuan Wang, Junyi Li:
MKDTI: Predicting Drug-Target Interactions via Multiple Kernel Fusion on Graph Attention Network. ICIC (25) 2025: 153-164 - [c10]Beibei Wang, Siyuan Zhou, Shiqu Chen, Junyi Li:
E-MSNGO: Explainable Multi-species Protein Function Prediction Model Based on Aggregated Networks. ICIC (26) 2025: 383-394 - [i2]Beibei Wang, Boyue Cui, Shiqu Chen, Xuan Wang, Yadong Wang, Junyi Li:
MSNGO: multi-species protein function annotation based on 3D protein structure and network propagation. CoRR abs/2503.23014 (2025) - 2024
- [j23]Yue Liu, Yuhuan Zhou, Xiumei Hu, Wuri Le-Ge, Haoyan Wang, Tao Jiang, Junyi Li, Yang Hu, Yadong Wang:
DIRMC: a database of immunotherapy-related molecular characteristics. Database J. Biol. Databases Curation 2024 (2024) - [j22]Lexiang Wang, Jingli Zhou, Xuan Wang, Yadong Wang, Junyi Li:
MCDHGN: heterogeneous network-based cancer driver gene prediction and interpretability analysis. Bioinform. 40(6) (2024) - [j21]Keliang Cen, Zheming Xing, Xuan Wang, Yadong Wang, Junyi Li:
circ2DGNN: circRNA-Disease Association Prediction via Transformer-Based Graph Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 21(6): 2556-2567 (2024) - [c9]Jingru Chen, Jianyong Pan, Yan Zhu, Junyi Li:
SLGNNCT: Synthetic Lethality Prediction Based on Knowledge Graph for Different Cancers Types. ICIC (LNBI 1) 2024: 159-170 - [c8]Ruiqi Li, Peishun Jiao, Junyi Li:
PF2PI: Protein Function Prediction Based on AlphaFold2 Information and Protein-Protein Interaction. ICIC (LNBI 2) 2024: 278-289 - [i1]Yuhuan Zhou, Yulin Wu, Weiwei Yuan, Xuan Wang, Junyi Li:
MKDTI: Predicting drug-target interactions via multiple kernel fusion on graph attention network. CoRR abs/2407.10055 (2024) - 2023
- [j20]Xiaoshuai Zhang, Huannan Guo, Fan Zhang, Xuan Wang, Kaitao Wu, Shizheng Qiu, Bo Liu, Yadong Wang, Yang Hu, Junyi Li:
HNetGO: protein function prediction via heterogeneous network transformer. Briefings Bioinform. 24(6) (2023) - [j19]Yan Zhu, Yuhuan Zhou, Yang Liu, Xuan Wang, Junyi Li:
SLGNN: synthetic lethality prediction in human cancers based on factor-aware knowledge graph neural network. Bioinform. 39(2) (2023) - [j18]Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li:
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information. Bioinform. 39(10) (2023) - [j17]Kaitao Wu, Lexiang Wang, Bo Liu, Yang Liu, Yadong Wang, Junyi Li:
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1713-1724 (2023) - [j16]Linlin Du, Rui Han, Bo Liu, Yadong Wang, Junyi Li:
ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2233-2241 (2023) - [j15]Xiaoshuai Zhang, Lixin Wang, Hucheng Liu, Xiaofeng Zhang, Bo Liu, Yadong Wang, Junyi Li:
Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2772-2780 (2023) - [c7]Yu Jiang, Jingli Zhou, Yong Zhang, Yulin Wu, Xuan Wang, Junyi Li:
NIEE: Modeling Edge Embeddings for Drug-Disease Association Prediction via Neighborhood Interactions. ICIC (3) 2023: 687-699 - 2022
- [j14]Lexiang Wang, Mingxiao Wu, Yulin Wu, Xiaofeng Zhang, Sen Li, Ming He, Fan Zhang, Yadong Wang, Junyi Li:
Prediction of the disease causal genes based on heterogeneous network and multi-feature combination method. Comput. Biol. Chem. 97: 107639 (2022) - [j13]Zhongqing Zhang, Qiqi Jiao, Yang Zhang, Bo Liu, Yadong Wang, Junyi Li:
OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection. Comput. Biol. Chem. 98: 107670 (2022) - [j12]Yulin Wu, Xuan Wang, Willy Susilo, Guomin Yang, Zoe Lin Jiang, Junyi Li, Xueqiao Liu:
Mixed-protocol multi-party computation framework towards complex computation tasks with malicious security. Comput. Stand. Interfaces 80: 103570 (2022) - [j11]Xiao Ye, Yulin Wu, Jiangsheng Pi, Hong Li, Bo Liu, Yadong Wang, Junyi Li:
Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3366-3373 (2022) - [c6]Qiqi Jiao, Yu Jiang, Yang Zhang, Yadong Wang, Junyi Li:
NSAP: A Neighborhood Subgraph Aggregation Method for Drug-Disease Association Prediction. ICIC (2) 2022: 79-91 - 2021
- [j10]Ming He, Chen Huang, Bo Liu, Yadong Wang, Junyi Li:
Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction. BMC Bioinform. 22(1): 165 (2021) - [j9]Junyi Li, Huinian Li, Xiao Ye, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Qing Liao, Bo Liu, Yadong Wang:
IIMLP: integrated information-entropy-based method for LncRNA prediction. BMC Bioinform. 22-S(3): 243 (2021) - [j8]Junyi Li, Wei Jiang, Henry Han, Jing Liu, Bo Liu, Yadong Wang:
ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering. Comput. Biol. Chem. 90: 107415 (2021) - [j7]Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang, Bo Liu:
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2157-2166 (2021) - [c5]Naile Shi, Yulin Wu, Linlin Du, Bo Liu, Yadong Wang, Junyi Li:
ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding. ICIC (3) 2021: 478-489 - 2020
- [j6]Junyi Li, Yuan Ping, Hong Li, Huinian Li, Ying Liu, Bo Liu, Yadong Wang:
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network. Comput. Biol. Chem. 88: 107317 (2020) - [c4]Junyi Li, Lixin Wang, Xiaoshuai Zhang, Bo Liu, Yadong Wang:
GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks. BIBM 2020: 29-34 - [c3]Xiaozhu Jing, Wei Jiang, Zhongqing Zhang, Yadong Wang, Junyi Li:
HGAlinker: Drug-Disease Association Prediction Based on Attention Mechanism of Heterogeneous Graph. ICIC (2) 2020: 384-396
2010 – 2019
- 2019
- [j5]Tao Jiang, Bo Liu, Junyi Li, Yadong Wang:
rMETL: sensitive mobile element insertion detection with long read realignment. Bioinform. 35(18): 3484-3486 (2019) - [j4]Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu, Yadong Wang:
Integrated entropy-based approach for analyzing exons and introns in DNA sequences. BMC Bioinform. 20-S(8): 283:1-283:7 (2019) - [c2]Junyi Li, Huinian Li, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Bo Liu, Yadong Wang:
Prediction of Human LncRNAs Based on Integrated Information Entropy Features. ICIC (2) 2019: 333-343 - 2018
- [c1]Rongjie Wang, Yang Bai, Yan-Shuo Chu, Zhenxing Wang, Yongtian Wang, Mingrui Sun, Junyi Li, Tianyi Zang, Yadong Wang:
DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes. BIBM 2018: 270-274 - 2017
- [j3]Quanxue Li, Junyi Li, Wentao Dai, Yi-Xue Li, Yuan-Yuan Li:
Differential regulation analysis reveals dysfunctional regulatory mechanism involving transcription factors and microRNAs in gastric carcinogenesis. Artif. Intell. Medicine 77: 12-22 (2017) - [j2]Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang:
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering. Bioinform. 33(17): 2750-2752 (2017) - 2016
- [j1]Su-Juan Wu, Junyi Li, Mushui Cao, Jing Yang, Yi-Xue Li, Yuan-Yuan Li:
A novel integrated gene coexpression analysis approach reveals a prognostic three-transcription-factor signature for glioma molecular subtypes. BMC Syst. Biol. 10(S-3): 71 (2016)
Coauthor Index
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