Epigenetics and Its Essence in Understanding Human Growth, Development and Disease
Epigenetics and Its Essence in Understanding Human Growth, Development and Disease
I INTRODUCTION
Epigenetics is concerned with the way the environment and certain variables can manipulate the
trajectory of gene expression. Although, epigenetic modifications do not result in the alteration of the
sequence of the genetic code of an individual, they may be pertinent actors with implications in human
growth and development. Epigenetics encompasses the interaction of behaviours and environment
culminating in changes which influence gene activity. In contradistinction to genetic modifications.
Epigenetic modifications are reversible; and do not provoke alterations in the DNA sequence but are
capable of interferance in reading the DNA sequence. DNA methylation depicts the covalent
superimposed methyl group to cytosine in CpG dinucleotides. DNA methylation presents as a
veritable epigenetic modification; and it governs gene expression by changing chromosome
structure, DNA conformation and stability as well as the functional trajectory between DNA and
protein. DNA methylation regulates gene expression via the conscription of proteins associated with
gene expression or by the inhibition of the binding of transcription factor(s) to DNA. Whereas
genetic alterations do modify protein formation, it is clear that epigenetic alterations impact on gene
expression to have genes '' turned on'' and ''turned off'', as appropriate. Thus, genes are not always in
functional mode. The resultant impact of environmental and anthropogenic presentations, such as diet
*Corresponding author: and physical activity are liable to induce epigenetic modifications in behaviours and gene-
Dr. Chrysanthus Chukwuma environment interactions [1-4]. DNA methylation constitutes a select epigenetic process applied by
Sr
cells for the control of gene expression. within the genome. Alterations in gene activity and
Executive Director, The
Chrysanthus Centre for Future- epigenetic errors can result in varying genetic, metabolic and degenerative disorders which may
Oriented Studies Abakaliki, disparately or in comorbid presentaions influence inter alia health, gene activity or expression, protein
Ebonyi State, Nigeria production and functionality. This entry exemplifies the reading and understanding of epigenetics in
Email: relation to inter alia beneficial developmental theories within the human race [3].
chrysanthus_chukwuma@yahoo
.com
165
Evaluating Epigenetics disparities in psychobiological dispositions. Current developments tend
to reveal epigenetic perspectives [3] of mental health, issues, challenges
Epigenetics has been recruited into the evaluation of organism- and opportunities [9, 10] of epigenetic paradigms in psychology to
environment or gene-environment interactions with particular unravel how nurture shapes nature and vice versa wnerein it is
reference to the application of genetic information within the lifespan controverted that genes are not destined features [8]. The
of a person and transgenerational inheritance. Epigenetics is engulfed incontrovertible evidence for genetic impacts on psychological traits
in the genetic and non-genetic spheres correlated to heritable enacts that humans are inextricably entrapped to their biology by not
phenotypic modifications, DNA methylation and regulation of having any iota or modicum of control of their psyche and behaviour.
gene expression. These changes are attached to genes, and do not As a mechanism for the regulation of gene expression, epigenetics has
lead to the alteration of the building blocks of the DNA [1-3]. In ostensibly enacted the departure from genetic determinism to
the genome that constitutes the complete set of cellular DNA, the transcend innate predispositions and modify human existence. The
epigenome regulates gene expression. The genome is established on pertinence of the interelatedness between genes and behaviour must
fertilization, with the code being the same all through the lifespan, be elucidated regarding the effect of the epigenetic mechanisms
other than mutations which result in distinct cells. Epigenetics can following birth and not merely prenatally as conventionally presented.
influence the timing and magnitude of gene expression, as well as the Behavioral epigenetics depicts behavior has durable impacts in the
concomitant phenotype. These epigenetic and external factors can regulation of genome functionality.
institute slight variations to DNA via metal ion addition, acetyl or
methyl group extrication from or addition to DNA or histones which Expressing DNA methylation and histones in epigenetic essence
control DNA wrapping and packing. Methyl group attachment
ostensibly diminish transcription or suppresses acetyl group Thus, a universally acknowledged form of epigenetic change is DNA
attachment to histones turns genes on. These biological genome methylation that involves the attachment of the methyl group of one
modifications to the genome are referred to as 'epigenetic factors', as carbon and three hydrogen atoms to DNA building blocks. The
taking place supra to the genome. In essence, cellular DNA provides occurrence of methyl groups in a gene, results in the gene being
the code for functional protein production, while the epigenetic factors turned off or suppressed, leading to non-production of protein. A
are switches which ''on'' and ''off'' genes [1, 2] as differentiation significant epigenetic feature realizable in the genome of higher
progresses during growth and development of an embryo with eukaryotes is DNA methylation in the C-5 position of the cytosine ring.
enduring impact on phenotypic presentations. The regulation Depending on the DNA methylation locus, it may function as a
correlates to specificity and uniqueness of protein production by suppressive or activation site for gene expression. Thus, DNA
cells appropriate to its functionality, such that proteins which methylation is a prime control programne in gene expression
promote muscle growth and development are not produced in hepatic modulation within numerous organisms. Gene silencing results from
cells. There are differences or variations in epigenetic modifications methylation due to DNA methyltransferases which transfer a methyl
between persons, tissues, and disparate cells within the same tissue. group from S-adenosyl-L-methionine to the cytosine carbon 5 position
[11]. As developmental stages progress, DNA methylation presentation
Epigenetic modifications can be sustained from one cell to the other
during cell division. The environment, such as diet [1-3], pollutant or in the genome vary due to regulated compliance between de
irritant exposure or vulnerability can impact the epigenome; and in novo DNA methylation and demethylation. Consequently, a
certain instances be inherited within generations or gene- unique DNA formation that drives tissue-specific gene
environment interactions [4]. Mechanisms which enact such changes expression is inculcated and acquired by differentiated cells.
are DNA methylation and histone modification; and as may be Inasmuch as, DNA methylation ostensibly poses as a stable
implicated or evident in coronavirus infection [5-7]. The principal epigenetic mark, it is perspicuously fragile, with an intricate
epigenetic processes involve DNA methylation, histone alterations and complexity in the interaction of epigenome, genome and other
non-coding RNA. These mechanisms are established in patterned pertinent environmental factors during life progression antecedent
regulation of tissue-specific gene expression, cell differentiation and to delivery/birth. The characteristic of DNA methylation in an
imprinting of the genome. individual dynamically varies due to environmental factors during
germ cell production, embryogenesis and post-delivery exposure.
Behavioural aspects or psychobiology of epigenetics During development phases, the dissipation of balances in DNA
methylation may culminate in imprinting health aberrations, with
Epigenetics is modifying the universally established linear conception nonspecified loci to increased susceptibility to diverse disorders.
of genome functionality by explicating how environmental and The epigenome uniquely drives lifetime experiences ab initio en
psychological variables regulate genome activity in the absence of utero and present future opportunities in the improvisation of clinical
alterations in the sequence of DNA. Epigenetic processess which applications [12].
mediate between environmental and psychological factors contribute
to conventional and aberrant behavioral development [8]. Histones are structural proteins present in the cell nucleus. DNA
encloses histones with resultant configuration of their forms. Histone
Experiences during growth and development are capable of imposing modification is due to either the introduction or excision of methyl or
indepth and sustained impacts on physical and mental disposition acethyl groups, each made up of two carbon, three hydrogen and
during the lifespan of an individual. The epigenome is dynamically one oxygen atoms. These chemical groups determine the wrapped
associated with DNA as a layer of information that is distinct from one fortification of DNA on histones that impacts gene suppression or
individual to another; it undergoes changes within diverse ambients not. DNA methylation may either inhibit binding of the
and spatiotemporal exposures and influences. The epigenome may be transcription machinery or formulate a platform appropriate for
regarded as a“missing moiety” of the aetiologic quagmire in explicating transcription, as evident in a crosstalk with histone modifiers [12].
or elucidating initiation, development and progression of psychological Definable errors in the epigenetic process due to modification
or mental disorders correlate to environmental exposures and impacts, of the inappropriate gene or neglect to attach a chemical group to a
in convergence with the genome. Studies are evolving to elucidate the specific gene or histone may culminate in aberrant gene
associated mechanisms in the initiation, sustenance, and heritability functionality or outright nonfunctionality. Invariably, histone
of epigenetic formulations as inextricably related to learning, memory, modification is an additional frequent aetiology of epigenetic
emotions and social behaviour in individuals within and without alteration. Alteration in gene activity, in addition to that
populations. Psychologic or behavioural epigenetics features a engendered via epigenetic errors, constitutes a common aetiology
paradigmatic modality to understand how gene expression correlates of genetic disorders, with tumors, metabolic and degenerative
to experiences and the environment with resultant individual diseases implicated in epigenetic untoward presentations. Exploration
166
to explicate and elucidate the interrelatedness between the genome contrast to genetic alterations which are irreversible in humans.
and the chemical moieties which contribute to its modification are Drugs which are target-specific for DNMTs included 5-azacytidine
being intensified, especially, to unravel the impacts of epigenetic for rejuvenation [11]. The repercussions of epigenetic alterations in
changes and aberrations in ageing, gene functionality, protein ageing are modifications of locus access to the genetic material with
production, environment and health [13]. resultant untoward gene expression, reactivation of transposable
elements as well as genomic instability [19]. A transposable element
Epigenetics constitutes the reversible heritable mechanisms which (TE, transposon, or jumping gene) is a DNA nucleic acid sequence in
result in the absence of any modification of the underlying DNA DNA capable of changing its position within a genome, and
sequence. Even though, chromosomes in the human genome intermittently creating or reversing mutations and modifying the
convey genetic information, the epigenome has the task for the genetic identity and genome size of the cell. Transposition frequently
functional utlization and stabilization of that veritable or vital occurs in the duplication of the same genetic material [20].
information that correlates the genotype with the phenotype [1-3].
These epigenetic alterations may occur spontaneously or governed These epigenetic progressive alterations to epigenetic information run
by extraneous or innate forces. concurrently with ageing in both dividing and nondividing cells as
epigenetic changes have expansive influence in the ageing process,
The functional and biological essence of epigenetics and ageing with occurrence at diverse levels, including decreased bulk levels
of core histones, modified arrangements of histone posttranslational
The rate of ageing is invariably governed by evolutionarily conserved
changes and methylation of DNA, canonical histone substitution with
genetic pathways, environmental factors and biological mechanisms.
histone variants, and modified noncoding RNA expression in both
Ageing in epigenetics relates to the functional and biological
organismal chronological ageing and replicative or cellular
importance of the epigenetic changes which accumulate as ageing
senescence [19]. Certain varieties of epigenetic information may
progresses, and are critical in tumorigenesis. Paradigmatic instances
influence the lifespan of the offspring in a transgenerational
are extant due to the global dissipation of DNA methylation in ageing
way [19]. it is sugggested that lifespan is more epigenetically
and cancer as well as via the promoter hypermethylation of genes with
predetermined than genetically predetermined. Also, that diet and
dual functionality in tumor suppression and progeria, such as the
other environmental factors influence lifespan through epigenetic
Werner syndrome (WRN) and lamin A/C genes [14]. Also sirtuins, a
information alterations; and epigenetic enzyme inhibitors may
family of NAD-dependent deacetylases act on Lys16 of histone H4 as a
drive the life span of model organisms. Epigenetics studies tend to
link between cellular transformation and life span.
postulate that it is not nature versus nurture rather nature plus
Ageing involves intricately complex multifactorial biological, chemical nurture, enforcing the obliteration of genetic determinism. Irrespective
and physical processes, gene-environment interactions [4] or of the epigenome stance, it ostensibly does not translate
disparately by genes or environment exhibited by all biota. across generations in essence. Researchers are exploiting the sphere
Spatiotemporally, it is depicted by premature, gradual or of the epigenome in order to explicate the manner in which lifestyle
accelerated decline in structural- functional perspectives. factors including alcohol, obesity and smoking dictate cancer risk.
Organismal aging is significant in human health in correlation to
Epigenetic clocks are proximate veritable ageing mechanisms than
vulnerability and susceptibility to diverse diseases, such as
other biomarkers
diabetes, metabolic and other endocrine disorders as well as
cancer, cardiovascular and neurodegenerative debilities [15]. Epigenetic clocks incorporates a set of CpG loci employing DNA
Conversely, cellular or replicative senescence is a specialized methylation levels to determine the age of an individual. These clocks
and potential endogenous anticancer mechanism whereby there is represent extremely accurate molecular correlate of chronological age
irreversible growth obliteration due to response of potential in humans. Epigenetic clocks depend on algorithms in calculating
oncogenic stimuli [16]. It is a potential driver in tissue remodelling biological age, basically on the read-out of the magnitude in which
in embryonic development and in the aftermath of tissue various loci traversing the genome of an individual are bound by
derangement that necessitates proliferation arrest [17]. Cellular methyl groups. An instance of epigenetic alteration. DNA
senescence shares several similarities as ageing but with hypomethylation, the decrement in universal DNA methylation is
contrasting characteristics. Ageing and diabetes result in identical probably due to methyl- deficiency from diverse environmental factors
organ and system perturbations which are supported concurrently by which have been postulated as a molecular marker in cancer and other
molecular processes and cellular senescence. Cellular senescence is biological processes [21]. The determination of the 5-mC concentration
basically an ageing mechanism implicated in numerous ageing-related or global methylation in debilitated or environmentally affected cells
diseases, and is significantly involved in the aetiology of tissue may provide the latitude for veritable data for disease detection
degradation, Senescent cells aggregation occurs during the ageing and analysis. The detection of DNA demethylation intermediate,
process: It is not clear how senescence contributes to diabetes 5-fC in diverse cells and tissues is applicable as a marker for indication
pathogenesis [18]. of active DNA demethylation. Direct 5-fC excision by thymine DNA
glycosylase, TDG for subsequent base excision repair, BER
Epigenetic change depicts a critical underlying mechanism in
processing that reverts altered cytosine to its unaltered form.
perspicuous impaired cellular activities during ageing and age-related
Differentially methylated regions, DMRs are DNA spheres which
diseases. Patterns of DNA methylation are determined by the de
present critically different methylation status among numerous
novo DNA methyltransferases DNMTs being DNMT3A and
samples. Genome-wide methylation profiling is frequently conducted
DNMT3B, which are eventually sustained by DNMY1 [11]. Ageing
for the identification of DMRs among treated and untreated samples to
and age-associated aberrations involve unique alterations in 5-
unravel active areas which are associated with regulation of gene
methylcytosine concentration with usual characterization of
transcription due to inter alia DMRs specificity to cells, tissues and
genome-wide hypomethylation and promoter-defined
individuals. DMRs are feasible as biomarkers or potential targets for
hypermethylation. These modifications in the epigenetic domain
epigenetic therapy [21].
reflect potential disease biomarkers and contribute to age-linked
disorders. Certain diseases, such as a hereditary type of sensory Epigenetic clocks encompass a set of CpG sites with
neuropathy with concomitant dementia are incontrovertibly due to determined DNA methylation concentrations correlate to individual
methylomic modifications. Epigenetic information and alterations age [22]. The clocks are recognisably esteemed accurate molecular
are reversible since they are determined by enzymes; and thus, correlate with chronological age in humans and other vertebrates, and
epigenetics is a potential target for therapeutic interventions in quantification potential in rates of biological ageing as well as longevity
167
tests and rejuvenating interventions. These unravel issues and deleted from the genetic material of the ovum and sperm of humans in
opportunities to elucidate clock mechanisms and biochemical fertilization following nuclei fusion. The nascent epigenetic
utility which necessitate exploiting or exploring nonhuman models, configurations are determined in every generation. It has been well-
epigenomic marks, population studies, drivers and regulators of age- nigh impossible to estrange the genetic, epigenetic and
associated modifications in single-cell, tissue- and disease- specific environmental spheres to traits inherited. Neuroepigenetics
models, as well as ethical issues in forensic age determination depicted critical impact in the spheres of learned behaviour,
and prediction of chronological ageing trajectory in a person [22]. addiction, cognition neurotoxicology and psychopathology with
Research suggested evidence, particularly, epigenetics for genome- tendency towards fascinating indictments rather than established or
wide DNA methylation changes in ageing and age-related disorders [23]. veritable findings [28] or consequences [29].
Epigenetic clocks which determine alterations in a limited number of
specific CpG loci can predict chronological age accurately in an Epigenetics and the complex interplay of aberrations and gene-
expansive range of species; and credible biomarkers for mortality environment interactions
prediction in humans. The impacts of ageing across the
Numerous human diseases are connected with complex gene
methylome in an expansive array of human and mice tissues
regulations and functions. These are integrated in environmental
exhibited age-related hyper- or hypo-methylation alterations. There
signals for cell modulation in the functional output of the genome.
is the tendency for the DNA methylation age-related changes to be
Diabetes is inextricably-linked with premature ageing. There is
enriched and deficient in specific genomic contexts, with certain
palpable variation in the progression rate of ageing in humans. A
similarities among tissues and species necessitating further research
[23]. The indefatigable proof that the age-related changes in DNA
simplistic biological paradigm is well-nigh impossible to determine
both the clinicopathological and theoretical modalities in gene-
methylation contribute to ageing emanates from anti-ageing [3, 4].
environment interaction processes The potential
interventions, such as caloric restriction [4, 24], dwarfism and
epigenetic, gerontological and clinicopathplogical correlates and
rapamycin application in mice [24]. The anti-ageing interventions
implications are to configure the population at risk for developing
retard the epigenetic clocks with reversal and/or obliteration of
premature ageing and senescence within diabetic and obese
reasonable age-related modifications in DNA methylation. Genome-
individuals [30, 31] for early development of therapeutic regimen in
wide maps [25] of DNA methylation can be generated to track
order to stem pecuniary burden and aberrant sequelae.
biological ageing, that is distinct from chronological ageing. The initial
epigenetic clocks were determined regarding blood which depicted The extant understanding of the relationships between genetics,
significant relationships with blood pressure and lipid epigenetics, and environment in diabetes and evidence for the role
concentrations, which are other variables of blood ageing. However, of epigenetic factors in metabolism regulation, and diabetes with its
the epigenetic ageing signature differs in disparate tissues [26], and risks and complications depict how the complex interactions
thus, these observations cannot be extrapolated to the kidney, for between genes and environment or gene-environment interactions
instance. It will be interesting to configure tissue-specific epigenetic [3, 4] may partly be mediated via epigenetic alterations and how
clocks which may correlate with other ageing indicators. These may information regarding nutritional and other environmental stimuli
expose robust divergence regarding the aetiology, expanse, are transmitted to the next generation. There is convergence in
mechanisms, consequences, and genes disrupted in the knowledge lacunae, research, recommendations and expansive
pathological process for the development of novel diagnostic tools and interest in the epigenome, defined broadly as modifications to
clinical applications. These technologies may generate expansive data chromatin morphological functionality which exclude the
concerning the modification of genetic material in the present and in modification of DNA sequence. Epigenetic control is crucial to both
the future. normal homeostasis and the disease state or process. Since diabetes
risk complications are inextricably-linked to both genetic and
Epigenetics is observed to be divergent to genetics but they are
environmental influences, numerous studies have perspicuously
both inextricably-linked, with incessant research to elucidate the
addressed the intersection of diabetes and epigenetics or
relationship per Jonathan Mill [27]. The environmental role in shaping
epigenomics. Multiple layers of epigenetic regulation, such as direct
the genome may have been exaggerated because cells have the self-
methylation of cytosine or adenine residues, covalent changes to
preservation to self- insulate from environmental assault per
histone proteins, higher-order chromatin morphology, and noncoding
Adrian Bird [27]. Transgenerational epigenetic inheritance prevails
RNA are observable [32]. These have severally been indicted in
in the mention of epigenetics in terms of the nuances and complexities
cellular mechanisms pertinent to diabetes; with sustained
of human health and disorders. The accumulated marks in somatic
erstwhile inextricably-linked associations between epigenetics,
cells provide expansive information regarding these spheres of
diabetes, obesity, and a litany of metabolic aberrations. For instance,
influence and mechanisms as modeled for the environment or
the agouti Ay mouse is an inbred strain that demonstrates profound
lifestyle. Epigenetics has been defined as chromatin alterations with
obesity due to epigenomic changes of a gene that affects food
inclusion of RNA alterations. Besides DNA methylation, DNA can
consumption [33]. Incontrovertibly, obesity observed in Prader-Willi
undergo hydroxymethylation, while modification can also be exerted
syndrome results due to impaired imprinting, a specialized
on proteins in the chromatin complex. It has been postulated that the
epigenomic alteration [34]. Depending on the experimental paradigm,
ageing process is reversible. Despite the lifestyle, the internal
data have demonstrated that epigenome alterations by manipulating
clock causes certain individuals to age rapidly and die early. Also,
defined chromatin-modifying enzymes are associated with
it is suggested via epigenome study that the biological scars of
metabolic repercussions, with resultant obesity or mitigating
traumatic experiences are passed on to their children [27], thus
obesity and hyperglycemia [35]. A vast majority of extant data
suggesting that DNA is not merely the mode of biological inheritance in
inextricably relate epigenetic processes [36-38] in the risk of inherited or
organisms, and that acquired traits are inheritable, however,
acquired diabetes and obesity [39, 40], as in the infamy of human
researchers are more interested in its potential to determine disease
experiments documented regarding the Dutch Hunger Winter, for
risk. As the full complement of genes are received in conception
instance [36], in conjunction with inordinate rodent research. It is
without modification until death, the information is conceivably
purposeful to enact data relating epigenomics to diabetes and
transmitted through ''epigenetic marks'' as chemical tags on genes
metabolism in advances for therapeutic intervention.
which dial gene output up or down. The transgenerational
epigenetic inheritance phenomenon does not provide compelling In another spectrum, SARS-CoV-2, the pathological aetiologic agent of
evidence by any realisable physiological phenomenon for it to function, COVID-19 [41-46], an increasingly transmitable and pathogenic viral
excepting in rare genetic disorders, definable genetic marks are infection relies on the age and health status of an individual to exert
168
its severity and untoward consequences. It provides ample latitude preformation relates that the germ cells of any organism contains
to comparatively analyze viral host epigenome regulation. Epigenetic preformed minute adults which unfold during the developmental
changes may be conceivably involved in the initiation of coronavirus process. epigenesis propounds that the embryo is formed in
complications necessitating epigenetic drugs to stem viral outbreak progressive consecutive exchanges within an amorphous zygote. Both
as well as configure pre- and post-exposure prophylaxis per COVID-19 stances tend to explicate developmental organization, religious and
[47] metaphysical polemics within the context of embryonic matter
exclusively as active or passive. The proponents of these two
Progress in procedures for DNA Methylation Analyses norms perspicuously underlie the application of gene-centric
metaphors in 20th century molecular revolution.
Methylation analysis involves the investigation of chromosomal
features of DNA or histone changes by methyl groups. The lysine On that score, development constitutes the central biological
residue in histone tails and the cytosine (C) base in the DNA can be mechanism, and postulations about its modalities have influenced
subjected to methylation. The epigenetic field portrays an expansive biological reasoning. Regarding “epigenesis vs preformation'',
array of methodologies in the determination of the status of DNA epigenesis states that any developing organism arises from an
methylation. These are categorized into (i) the discovery of unformed material and, over time, the gradual emergence of form
unknown epigenetic modifications; and (ii) DNA methylation during the development process. Conversely, preformation
assessment within defined regulatory genes and/or regions. [48]. postulates that development starts with an entity as either in a
These tools are selected based on feasibility and cost-benefit preformed, predelineated, predetermined [54], preestablished or
analysis. These epigenetic technologies involve nascent strategies predefined manner. The debate of “epigenesis or preformation”is
with latitude to single-cell level, elevated- throughput genomic and partly metaphysical about what is in existence regarding whether it is
epigenomic profiling with augmented high resolution having beneficial form or also the unformed that culminates in the formed. In part, it
progress in epigenetics [49]. is epistemological whether it is determined and established by
observation or inference. Polemics in these inextricably-linked
Notwithstanding the rewarding outcome of genome-wide
questions have persisted since eternity but genetic determinists
association studies (GWAS) in the identification of loci connected to
currently rely on the already “formed”via genetic inheritance,
ubiquitous disorders, a vast majority of the aetiologies have not been
whereas others depend on the efficacy of environmental plasticity.
explicated. Progress in genomic technologies has provided the
There are major development theories from Aristotle on generation
latitude to commence large-scale research in human disease-
to current systems-theoretic and stem cell-based perspectives.
related epigenetic disparity, specifically in DNA methylation [50].
Indubitably, “epigenesis vs preformation”does not represent the
These Epigenome-Wide Association Studies, EWAS provide ample
exclusive enduring theoretical divergence on development.
and novel challenges and opportunities [51] which are not available in
However, this is an inclusive trajectory to inculcate patterns of
GWAS. Integrating EWAS and GWAS is a potential to analyse and
transformation and consistency in arguments in biological
elucidate the functionalities of complex GWAS haplotypes. Explicating
development. Nature or nurture, epigenesis or preformation,
and unravelling the genetic and non- genetic determinants of human
genetic determinism or developmental free will, or whether a certain
complex disorders constitute a prime challenge in biomedical
version of convergence are plausible remain the issues for
studies which exposed an excess of 800 single nucleotide
determination. The terms of the never-ending discourse, and the
polymorphism, SNP relationships for over 150 disorders and multiple
undergirding hypothesis incessantly sustain arguments on the
traits. Despite the lacunae in the knowledge of complete genetic basis
temporal beginning of life, with resultant indepth implications for
for human complex disorder, resequencing of exomes, and whole
bioethics and policy. Recently, molecular biology has rapidly evolved to
genomes make provision for the identification of the unelucidated
involve epigenetic research for the evaluation of organism-
causal genetic disparities. Interests persist to explore the influence of
environment interactions [3] which are liable to present chronic
non-genetic and epigenetic factors in intricately complex disease
resultant impacts. These sort of responses are likely to emanate from
aetiology.
stress in early life stage, the usage of genetic information within the life
Asthma is a ubiquitous chronic respiratory airway disorder elicited span of an individual and transgenerational inheritance. Elucidation of
by environmental factors, and ostensibly via interaction with human epigenetic mechanisms potentiates the evaluation of multigenerational
genome culminating in epigenetic alterations. EWAS principally and heritable impacts due to environmental stressors, such as
examined DNA methylation and its relationship with disease or contaminants [55] and pollutants, as are driven by epigenetic modifiers
traits thereof, exposure variables or gene expression [52]. A method for the identification of prime heritable marks with concomitant results
that is precise, specific and efficient for the detection of the exact at the levels of the organism and population.
DNA methylation levels is pertient for the elucidation of the prime
DISCUSSION
functionalities of DNA methylation in biological processes or
mechanisms with the objectives to augment research and Epigenetics is defined as the molecular DNA changes which
development of novel optimum diagnostic and therapeutic trends regulate gene activity and are independent of DNA sequence, and
and targets. are stable mitotically. Epigenetics studies have attained exponential
growth recently, in progressive trajectories with remarkable
Implications of opposing dominance in epigenesis vs epigenetics
resultant impacts. These demand stringent methodologies and
The application of the terminologies epigenesis and epigenetics superior technologies to promote epigenetics to apical molecular
has remarkably increased concurrently with confusing and conflating biology [3]. The prime epigenetic regulations include DNA methylation,
disparate issues prevailing in contextual biological and philosophical histone modifications, and non-coding RNAs (ncRNAs) [49].
literature. Due to the extant confusion encompassing these two terms,
Genes are susceptible to diverse fluctuations. The stem cell
it has become pertinent to explicate the disparities within their
epigenome simulates a fragile balance of chromatin (de-)
conceptual and historical evolutionary perspectives. The term
modification mechanism. A model [56] demonstrated that modifications
''epigenesis'' evolved from primordial embryological studies [53].
in DNA methylation were due to dynamics of histone alterations.
In contradistinction to Aristotelian natural philosophy, it was
This model may create a mechanistic explanation in the origin of
determined that epigenesis received fluctuating prominence since
tissue, age and cancer-specific DNA methylation profiles. DNA
the 17th century, with its entry into neo- classical embryology and
methylation is a critical ingredient in epigenetic change that is
relevance in divergence to the preformationist stance. Whereas
inextricably-linked in gene expression regulation. A key DNA
169
methylation pathway diminishes the potential of transcription environment induce changes which govern the functionality of genes.
factors to bind to gene promoter regions [57]. Although several Epigenetics translates to ''around or surrounding genetics'', as advert
investigations have been conducted to measure genome-wide DNA to naturally controlled processes which govern gene expression.
methylation levels at high resolution, the significance of these varied Epigenetics is the mechanism in which genes are designate by cells
DNA methylation levels on transcription/factor binding potentials disparately for either usage or storage. Epigenetics is the study of how
has not been clearly explicated. the environment affects the genome of an individual during
development, and the development of the descendants in the absence
An introduction of a computational model of stem cell of alteration of the DNA sequence.
populations whereby each cell has an artificial genome, depicted that
transcription of the genes encoded by the genome was influenced Conflicts of interest
by DNA methylation, histone alteration and a cis- regulatory
network [56]. Model dynamics were investigated using molecular None declared.
crosstalk between the disparate mechanisms. The epigenetic states
Financial support
of the genes were vulnerable to disparate magnitudes of variations.
It was exhibited that the timescales of these fluctuations or temporal None declared.
variations are determinants if the condition or form connected with
a defined gene will hold sway or not during cell replication. The REFERENCES
model suggests that modifications in DNA methylation states are
effected via the dynamics of histone modification. It is suggested that 1. Medline Plus. 2021.
the model demonstrates a mechanistic explication of the profiles https://medlineplus.gov/genetics/understanding/howgenes
pertaining to the origin of tissue, age and cancer-specific DNA work/epigenome/.
methylation [56]. Genetic aetiologies in human diseases are exposed in 2. Alegria-Torres JA, Baccarelli A & Bollati V. Epigenetics and
accelerated dimension.. An increasing subclass of disease-causing lifestyle. Epigenomics. 2011;3:267-77.
mutations correlates to modifications in the epigenome or in the 3. Chukwuma Sr C. Characterization of the clinical and
ubiquity and activity of proteins involved in chromatin structure molecular perspectives of epigenetics. Archives of Clinical
regulation [58]. Investigation. 2022; 1(1). DOI: 10.31579/aci.2022/003.
4. Chukwuma Sr C. Is Diabetes a Model for Gene-environment
Epigenetics is accorded cognizance in tissue development and in the Interaction in Premature Senescence? 2014;4:25.
development and progression of several ubiquitous disorders. http://www.iiste.org/Journals/index.php/JBAH/article/view/
Although, certain risk factors have been established by population- 17380.
based epigenetic epidemiologic research in epigenetic functionality in 5. Chukwuma Sr C. Features in the emergence and
ubiquitous diseases, the relatively nascent scientific field embraces reemergence of infectious diseases, gain-of-function research
unique challenges, issues and opportunities; but these present and geopolitics. Biomed J Sci & Tech Res, 2022;40(5)-
potential resolutions [59]. In an organism, epigenetic marks are 2022.BJSTR.MS.ID.006500. DOI:
modifiable by environmental factors during the lifespan of an 10.26717/BJSTR.2022.40.006500.
individual. Changes in the epigenetic code may be either beneficial or 6. Chukwuma Sr C. Perspectives in the emergence and re-
associated with adverse disorders, such as cancer and neuropsychiatric emergence of infectious diseases, geopolitics and gain-of-
aberrations [60]. Evidence indicates that some epigenetic marks are function research. Scholars international journal of
inherited, and can remould developmental and cellular characteristics biochemistry. 2020. DOI: 10.36348/sijb.2022.v05i01.001.
transgenerationally. This portends expansive implications for 7. Chukwuma Sr C. Information and communication needs in
understanding biological functionalities and disease etiologies with the administration of ibuprofen in the treatment of
potentials for newfangled trajectories in diagnosis and treatment of symptoms in COVID-19 patients. Journal of Medical
human diseases, such as the perturbative impacts of traumatic stress, Research: 2020;6(4):128-130
drug or toxicant exposure and susceptibility to brain functionalities as https://doi.org/10.31254/jmr.2020.6405.
well as the adaptive importance of epigenetic inheritance and cost- 8. González-Pardo H & Marino P-A. Epigenetics and its
benefit of acquired epigenetic marks which subsist transgenerationally. implications for Psychology. Psicothema. 2013;25(1):3-12
DOI: 10.7334/psicothema2012.327.
CONCLUSION 9. Chukwuma Sr C: Environmental, developmental and health
perspectives in Egypt. Environmental Management & Health.
This article argues that epigenetic changes mediate environmental
1995;6(1):38-46. https://doi.
influences in gene expression, and modulate disease risk
org/10.1108/09566169510078458.
inextricably-linked with genetic spatiotemporal variations and
10. Chukwuma Sr C. Social welfare and population dynamics in
transmissability. Analytical epigenetic paradigm presents
Egypt with particular reference to the status of women.
substainable objectives and advancements for identifying,
International Journal of Environmental Education &
explicating and elucidating mechanisms wherein genetic and
Information. 1995;14(1):45-62.
environmental influences are combinatorial contributary factors to
11. Johnson A, Akman K, Calimport S et al. The Role of DNA
disease risks and sequelae. The unravelling of spatiotemporal
Methylation in Aging, Rejuvenation, and Age-Related
disparities in epigenetic profiling is of pertinence for the research
Disease. Rejuvenation Research. 2012;15(5):483-94 DOI:
in ageing, the variables associated with diverse diseases, such as
10.1089/rej.2012.1324.
cancer, respiratory diseases, SARS-CoV-2/COVID-19, diabetes,
12. Dhar GA, Saha S, Mitra P & Chaudhuri RN. DNA methylation
obesity, as well as other metabolic and endocrine disorders. Thus,
and regulationof gene expression: Guardian of our health:
this article reviews epigenetic mechanisms on DNA methylation;
Nucleus (India). 2021;64(Suppl 1) DOI: 10.1007/s13237-
genetic and environmental as they influence ageing, cellular
021-00367-y.
senescence and certain confounding diseases, philosophical
13. CDC. What is epigenetics? 2022.
development theories, and epigenetic psychology as they relate to
https://www.cdc.gov/genomics/disease/epigenetics.htm.
humans. A conspectus of methodological analysis for epigenetic
14. Fraga MF & Esteller M. Epigenetics and aging: the targets and
profiling is considered for cost-benefit of tools and techniques as well
the marks. Trends in Genetics. 2007;23(8):413-8 DOI:
as advancement in disease treatment. Summarily, epigenetics is the
10.1016/j.tig.2007.05.008.
study of the ways and means whereby human behaviour and
170
15. Brunet A & Berger SL. Epigenetics of Aging and Aging- 34. Ohta T, Gray TA, Rogan PK, et al. Imprinting mutation
related Disease. The Journals of Gerontology: Series A, mechanisms in Prader-Willi syndrome. Am J Hum Genet
2014;69(Suppl_1):S17-S20, https:// 1999;64:397-413.
doi.org/10.1093/gerona/glu042. 35. Rosen ED. Epigenomic and transcriptional control of
16. Campisi J. Aging, Cellular Senescence, and Cancer Annual insulin resistance. J Intern Med. 2016;280:443-456.
Review of Physiology. 2013;75:685-705. 36. Tobi EW, Slieker RC, Luijk R, et al. Biobank-based Integrative
https://doi.org/10.1146/annurev-physiol-030212-183653. Omics Studies Consortium. DNA methylation as a mediator of
17. Muñoz-Espin D, Serrano M. Cellular senescence: From the association between prenatal adversity and risk factors
physiology to pathology. Nature Reviews. Molecular Cell for metabolic disease in adulthood. Sci Adv. 2018;
Biology 2014;15(7):482-96 DOI: 10.1038/nrm3823. 4:eaao4364.
18. Chukwuma Sr C. Aging, cellular senescence and diabetes 37. Deans C & Maggert KA. What do you mean,“epigenetic”?
mellitus; Clinicopathological correlates, trends and targets. Genetics 2015;199:887-896.
Archives of Health Science. 2020;10.31829-2641-7456- 38. Berger SL, Kouzarides T, Shiekhattar R & Shilatifard A. An
ahs2020-4(1)-131. operational definition of epigenetics. Genes Dev.
19. Pal S & Tyler J K. Epigenetics and aging. Science Advances. 2009;23:781-783.
2016;2(7):e1600584-e1600584. DOI: 39. Chukwuma Sr C. Regulatory and metabolic interactions of
10.1126/sciadv.1600584. carbohydrates and lipids in diabetes and obesity. J Biotech
20. Bourque G, Burns K, Gehring N et al. Ten things you should Res. 2019;5(11):123-127 doi.org/10.32861/jbr/511.123.127.
know about transposable elements. Genome Biology. 40. Chukwuma Sr C. Etiopathophysiological functions of
2018;19(1) DOI: 10.1186/s13059-018-1577-z. carbohydrate-lipid interactions associated with obesity,
21. Moore LD, Le T & Fan G. DNA Methylation and Its Basic diabetes and COVID-19. Diabetes & Obesity
Function. Neuropsychopharmacology: official publication of International Journal, 2022;7(1), DOI: 10.23880/doij-
the American College of Neuropsychopharmacology. 16000252.
2012;38(1). DOI: 10.1038/npp.2012.112. 41. Dhama K, Patel KS & Pathek M. An update on SARS-CoV-
22. Bell CG, Lowe R, Adams PD et al. DNA methylation aging 2/COVID-19 with particular reference to its clinical
clocks: Challenges and recommendations. Genome Biology. pathology, pathogenesis, immunopathology and mitigation
2019;20(1) DOI: 10.1186/s13059-019-1824-y. strategies Project:COVID-19 Preparedness and Response in
23. Unnikrishnan A, Freeman WM, Javkson J et al. The role of Latin America. 2020. DOI:
DNA methylation in epigenetics of aging. Pharmacology 10.20944/preprints202003.0348.v1.
Therapeutics. 2018;195. DOI: 42. Chukwuma Sr C. Geopolitical issues in health and biosecurity
10.1016/j.pharmthera.2018.11.001. concerning gain-of-function research, emergence and re-
24. Wang T, Tsui B, Kreisberg JF, Robertson NA, Gross AM, Yu emergence of infectious diseases. International Journal of
MK, Carter H, Brown-Borg HM, Adams PD & Ideker T. Clinical Virology. 2022. DOI: 10.29328/journal.ijcv.1001043.
Epigenetic aging signatures in mice livers are slowed by 43. Chukwuma Sr C. Pathophysiological carbohydrate-lipid
dwarfism, calorie restriction and rapamycin treatment. interactions in COVID-19, obesity, and diabetic individuals.
Genome Biology. 2017;18(1) DOI: 10.1186/s13059-017-1186- OAJBS.ID.000427.pdf. 2022;4(2):1721-25. DOI:
2. 10.38125/OAJBS.000427.
25. Salameh Y, Bejaoui Y, El Hajj N. Epigenetic Biomarker and 44. Chukwuma Sr C. Progress in the ascertainment of vaccines
Personalized Precision Medicine. DNA Methylation regarding SARS-CoV-2 during the COVID-19 pandemic and
Biomarkers in Aging and Age-Related Diseases. Front. Genet. in the future. Progress in Medical Sciences, 2022;6(2):1-4.
Sec. Epigenomics and Epigenetics. 2020. DOI: 10.5455/ pms.20221052.
https://doi.org/10.3389/ fgene.2020.00171. 45. Song C, Li Z, Li C et al. Breakthroughs in Immunotherapies
26. Koch CM, Wolfgang W. Epigenetic-aging-signature to and Precision Treatment against Infectious Diseases. SARS-
determine age in different tissues. In: Aging: open-access CoV-2: The Monster Causes COVID-19. Front. Cell. Infect.
Impact journal on aging 3(10):1018-1027. Microbiol. Sec. Clinical Microbiology. 2022.
27. Spinney L. Epigenetics, the misunderstood science that could https://doi.org/10.3389/fcimb.2022.835750.
shed new light on ageing. BSTLast. 2022. 46. Chukwuma Sr C. Ecological Analysis of the COVID-19
https://www.realclearscience.com/2021/10/11/epigenetics_ Pandemic. Biomedical Research and Clinical Reviews. 2021;
could_shed_new_light_on_aging_798.290.html. 3(1); DOI:10.31579/2692-9406/032.
28. Sweatt JD. The Emerging Field of Neuroepigenetics. Neuron. 47. Atlante S, Mongelli A, Barbi V et al. The epigenetic
2013; 8(3):624-32. DOI: 10.1016/j.neuron.2013.10.023. implication in coronavirus infection and therapy. Clinical
29. Chukwuma Sr C. An overview of the neurological Epigenetics. 2020;12(1):156 DOI: 10.1186/s13148-020-
consequences of obesity and diabetes. Journal of 00946-x.
neuroscience and neuropsychology. 2020;3:106. 48. Kurdyukov & Bullock M. DNA Methylation Analysis: Choosing
30. Chukwuma Sr C. Aging, cellular senescence and diabetes the Right Method. Biology. 2016;5(3) DOI:
mellitus; Clinicopathological correlates, trends and targets. 10.3390/biology5010003.
IGRPS. Res arch Article IJPIT. 2020;2(1): 105. 49. Li Y. Modern Epigenetics Methods in Biological
31. Chukwuma Sr C. Gain-of-Function Research and Geopolitics Research·Methods. 2020;187(2) DOI:
in the Emergence and Reemergence of Infectious Diseases 10.1016/j.ymeth.2020.06.022.
and Microbiome Variants. International Journal of 50. Rakyan VK, Down TA, Balding DJ & Beck S. Epigenome-wide
Chemical and Life Sciences. 2021;10(8):2197-2205. DOI: association studies for common human diseases. Nature
10.2.1746/ijcls.2021.10.8.2. Reviews Genetics. 2011;12(8):529-41 DOI: 10.1038/nrg3000.
32. Keating ST, El-Osta A. Epigenetics and metabolism. Circ Res. 51. Chukwuma Sr C. Type 1 diabetes: issues, challenges and
2015; 116:715-736. opportunities. Edelweiss Applied Science and Technology.
33. Bouchard C. The genetics of obesity: from genetic 2018. http://edelweisspublications.com/
epidemiology to molecular markers. Mol Med Today. edelweiss/article/type-1-diabetes-mellitus- issues-
1995;1:45-50. challenges-opportunities-2576-8484-east-18-223.pdf. DOI:
10.33805/2576-8484.156.
171
52. Edris A, Dekker D HT, Melen E & Lahousse L. Epigenome
Wide Association Studies in Asthma: A Systematic
Review: Clinical and Experimental Allergy: 2019;49(2) DOI:
10.1111/cea.13403.
53. Speybroeck L, Waele D & Van de Vijver G. Theories in Early
Embryology. Annals of the New York Academy of
Sciences. 2002;981(1):7-49 DOI: 10.1111/j.1749-
6632.2002.tb04910.x.
54. Stanford University. Theories of biological development.
The Stanford Encyclopedia of Philosophy. The Metaphysics
Research Lab. Department of Philosophy. Stanford
University. 2022.
https://plato.stanford.edu/ehtries/theories-biological-
development.
55. The Role of Epigenomics in Aquatic Toxicology: Brander S,
Biales AD & Connon RE. · Environmental Toxicology and
Chemistry. 2017; 36(10):2565-2573 DOI: 10.1002/etc.3930.
56. Przybilla J, Rohlf T & Galle J. Towards a Mechanistic
Understanding of Epigenetic Dynamics. In: Teschendorff, A.
(eds) Computational and Statistical Epigenomics.
Translational Bioinformatics, 2015;7. Springer, Dordrecht.
https://doi.org/10.1007/978-94-017- 9927-0_7.
57. Feng W, Dong Z, He B et al. Analysis method of epigenetic
DNA methylation to dynamically investigate the functional
activity of transcription factors in gene expression. BMC
Genomics. 2012;13, Article number: 532.
https://doi.org/10.1186/1471-2164-13-532.
58. Zoghbi HY & Beaudet A. Epigenetics and Human Disease. Cold
Spring Harbor perspectives in biology. 2016;8(2):1-28 DOI:
10.1101/cshperspect.a019497.
59. Jin Z & Liu Y. DNA Methylation in Human Diseases. Genes &
Diseases. 2018;5(1) DOI: 10.1016/j.gendis.2018.01.002.
60. Bohacek J & Mansuy IM. Epigenetic Inheritance of Disease
and Disease Risk. Neuropsychopharmacology: official
publication of the American College of
Neuropsychopharmacology. 2012;38(1). DOI:
10.1038/npp.2012.110
172