GWAS Summary Statistics Data Harmonisation

A DSL for data-driven computational pipelines

Nextflow training material

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

Source code for the Seqera documentation portal.

A proof of concept of RNAseq pipeline

Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)

Protein 3D structure prediction pipeline

Classic hello world script in Nextflow language

Pipeline to fetch metadata and raw FastQ files from public and private databases

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Run e2e tw-pywrap implementation via CI

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Test data to be used for automated testing with the nf-core pipelines