Lists (1)
Stars
Blazing-Fast Bioinformatic Operations on Python DataFrames
Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse
MCP server for biological activities analysis using decoupler
Bagz is a format for storing a sequence of string records. It supports per-record compression and fast index-based lookup.
Open-source, cloud-native transactional tensor storage engine
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Hera makes Python code easy to orchestrate on Argo Workflows through native Python integrations. It lets you construct and submit your Workflows entirely in Python. ⭐️ Remember to star!
Streaming directly to Zarr on the file system or S3
Automatically annotate cell types, consistently across samples.
A high-performance distributed file system designed to address the challenges of AI training and inference workloads.
Arc Virtual Cell Atlas
Universal Single-Cell Genomics Preprocessing package
A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
Python package to perform enrichment analysis from omics data.
GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
Scientific Python Library Development Guide and Cookiecutter
TorchGeo: datasets, samplers, transforms, and pre-trained models for geospatial data
Library for specialized dense and sparse matrix operations, and deep learning primitives.
Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
An introduction to bioimage analysis - http://bioimagebook.github.io