- 🔭 I’m currently working on: implementing ML models in analysis & pipeline automation & spatial transcriptomics neighbourhood analysis (interactVis)!
- 🌱 I’m currently learning: NextFlow!
- 💬 Ask me about: Anything! I'll try and help as best as I can!
- 📫 How to reach me: LinkedIn
- ⚡ Fun fact: I went to high school in China! And my profile picture is AI generated (surprise!).
- https://doi.org/10.7554/eLife.77335
- https://doi.org/10.1038/s41467-021-26297-6
I am a Senior Bioinformatician at The Francis Crick Institute in London, I work within the Bioinformatics and Biostatistics science technology platform providing analysis support to research scientists. I learnt to code (R) and the basics of bioinformatics during my PhD, which was focussed on the epigenetic and transcriptomic profiles of Glioblastoma brain tumours. Following my PhD I took up a position as Bioinformatician within the Genome Centre at QMUL for 3 years, before moving to The Crick. Being predominantly self-taught; I love the continual learning process of coding and bioinformatics which makes everyday exciting!
I have experience with many dataset types including:
- Bulk-RNAseq
- Single-cell-RNAseq
- Spatial transcriptomics
- ChIPseq
- RRBS
- Methylation arrays
- WGS
- Flow cytometry
My services range from support to full analysis pipelines for clients, which may include where appropriate:
- Quality control
- Filtering
- Normalisation
- Dimensionality reduction
- Clustering
- Exploratory analysis
- Batch correction
- Differential analysis
- Pathway analysis and more.