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tests for sc.pl.diffmap and sc.pl.rank_genes_groups

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

Enhancement

#3787 In scverse/scanpy;

· sueoglu opened on Sep 5, 2025

replace remaining utils with fast-array-utils

Development Process 🚀

Status: Open.

Enhancement

#3784 In scverse/scanpy;

· flying-sheep opened on Sep 4, 2025

Size calculation in <code>sc.pl.embedding</code> should ignore NaNs

Triage 🩺This issue needs to be triaged by a maintainerThis issue needs to be triaged by a maintainer

Status: Open.

Enhancement

#3770 In scverse/scanpy;

· MLubetzki opened on Aug 22, 2025

Integration Testing CI Test Failure on python 3.12

Status: Open.

#3763 In scverse/scanpy;

· scverse-bot opened on Aug 13, 2025

Scipy upperbounding removed in version 1.11.4

Needs info❔More information neededMore information needed

Status: Open.

Bug

#3759 In scverse/scanpy;

· ddemaeyer opened on Aug 5, 2025

sc.pp.scale changes adata.raw.X

Needs info❔More information neededMore information needed

Status: Open.

Bug

#3756 In scverse/scanpy;

· jpagolia opened on Jul 31, 2025

Dask tests aren’t robust

Area – ReproducibilityExact replicationExact replication

Status: Open.

Bug

#3740 In scverse/scanpy;

· flying-sheep opened on Jul 28, 2025

Remove default from sc.pp.scale’s zero_center (so it never accidentally densifies)

breaking change ‼️

Status: Open.

Enhancement

#3730 In scverse/scanpy;

· flying-sheep opened on Jul 23, 2025

Don’t create AnnData objects with duplicate var/obs names in sc.datasets

breaking change ‼️

Status: Open.

Enhancement

#3729 In scverse/scanpy;

· flying-sheep opened on Jul 22, 2025

Column-wise <code>dask</code> <code>map_blocks</code>

MetaA meta-request to be implemented in multiple stepsA meta-request to be implemented in multiple steps

Status: Open.

Enhancement

#3723 In scverse/scanpy;

· ilan-gold opened on Jul 21, 2025

· 

1.12.0

Refactor <code>BasePlot</code> not to create a dataframe representation of the data

Area - Plotting 🌺

Area – Performance 🐌

good first issueeasy first issue to get started in OSS community contribution!easy first issue to get started in OSS community contribution!

Status: Open.

Enhancement

#3718 In scverse/scanpy;

· ilan-gold opened on Jul 18, 2025

· 

1.11.4

sc.pl.dotplot is surprisingly ineffective for subsets of data

Status: Open.

Bug

#3717 In scverse/scanpy;

· VladimirShitov opened on Jul 17, 2025