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44 Open 88 Closed
44 Open 88 Closed
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Issues list

VisiumHD: Reading in raw_probe_bc_matrix.h5
#300 opened Apr 8, 2025 by julienmortier
spio.cosmx appends path two times to the file name
#298 opened Apr 3, 2025 by tsvvas
Unique cell_ID issue with cosmx reader
#291 opened Mar 18, 2025 by jennycmuscat
2
Use scanpy for reading matrixes
#288 opened Mar 15, 2025 by LucaMarconato
Read cell_feature_matrix in market format
#287 opened Mar 13, 2025 by ddiez
4
VisiumHD: load scalefactor microns_per_pixel in anndata
#286 opened Mar 11, 2025 by ConstensouxAlexis
4
Legacy implementation of Dask no longer supported - fixed via installations via github
#285 opened Mar 11, 2025 by Lisamrshhsr
1
Python Environment
#277 opened Feb 14, 2025 by TheLordRaj
1
Add dataset_id prefix to tables in Visium HD visium-hd
#273 opened Feb 6, 2025 by LucaMarconato
Load Visium HD generated without microscopy image
#270 opened Jan 31, 2025 by cavenel
8
Problem of reading dbit-seq image
#267 opened Jan 26, 2025 by KaiLi-2324
1
failure to import spatialdata_io
#263 opened Jan 14, 2025 by Yijia-Jiang
1
z_index = 0 for polygons in MERSCOPE
#256 opened Jan 5, 2025 by LucaMarconato
3
Change points to shapes for stereo-seq
#253 opened Jan 3, 2025 by LucaMarconato
12
Selecting specific stains when reading merscope files into a sdata object.
#250 opened Dec 12, 2024 by omiethescientist
3
In .geojson parsed, the index should be parsed from .geojson
#249 opened Dec 12, 2024 by LucaMarconato
2
Xenium Ranger 3.0.1.1 after Cellpose resegmentation - "ValueError: A linearring requires at least 4 coordinates."
#245 opened Dec 2, 2024 by Lem-P
1
15
Update MACSima reader when stitching is supported
#243 opened Nov 27, 2024 by melonora
1
Xenium cell segmentation mask export requires coordinate flipping among y-axis
#240 opened Nov 18, 2024 by matt-sd-watson
1
Missing tiles in Xenium H&E image
#235 opened Nov 6, 2024 by marcovarrone
4
Reduce readers' memory consumption
#229 opened Oct 28, 2024 by marcovarrone
1
Remove dummy channel from xenium xenium
#226 opened Oct 23, 2024 by LucaMarconato
We're storing spot locations as int64 (and maybe more) - should be sth smaller
#220 opened Oct 10, 2024 by timtreis
3
cosmx - ValueError: Affine matrix must be homogeneous.
#213 opened Oct 2, 2024 by jamesboot
7
Merscope - not loading vpt output
#208 opened Sep 18, 2024 by MathieuBo
1
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