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Pull requests: scverse/spatialdata-io

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Pull requests list

Modify from_legacy_anndata so that it can read older ST datasets
#347 opened Nov 26, 2025 by timtreis Loading…
New cosmx reader with stitching
#339 opened Oct 31, 2025 by quentinblampey Loading…
Add the molecular_cartography reader from sopa
#338 opened Oct 31, 2025 by quentinblampey Loading…
Load Xenium mask labels using Dask
#337 opened Oct 28, 2025 by marcovarrone Loading…
1
[pre-commit.ci] pre-commit autoupdate
#335 opened Oct 27, 2025 by pre-commit-ci bot Loading…
fix cosmx load error
#331 opened Oct 15, 2025 by JarningGau Loading…
1
Align CLI arguments with reader APIs for full parameter consistency
#321 opened Sep 5, 2025 by Copilot AI • Draft
@LucaMarconato
Update legacy_anndata.py
#320 opened Sep 4, 2025 by Liripo Loading…
1
Fixes #298: Repeatedly appending parent path to flatFiles
#305 opened Apr 29, 2025 by mayank-singh-sikarwar Loading…
1
Use scanpy for reading matrixes
#292 opened Mar 19, 2025 by cgeyskens Loading…
Xenium Reader now filters out invalid polygons xenium
#283 opened Feb 27, 2025 by timtreis Loading…
1
New reader for G4X datasets (Singular Genomics)
#281 opened Feb 19, 2025 by ckmah Loading…
4
Chunkwise image loader
#279 opened Feb 17, 2025 by lucas-diedrich Loading…
9
Fixes seqfish reader v2 seqfish
#268 opened Jan 28, 2025 by LucaMarconato Loading…
Add universal image loader
#234 opened Nov 5, 2024 by minhtien-trinh • Draft
2
Add reader for DIA-NN output
#233 opened Nov 5, 2024 by minhtien-trinh Loading…
1
extract shape of full-resolution image, estimate visium pixel size
#219 opened Oct 10, 2024 by ghaith-mq • Draft
1
adjusted docstrings in steinbock reader py file
#165 opened Jun 27, 2024 by LukasHats Loading…
1
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